Started by upstream project "BIOFORMATS-test-repo" build number 89
originally caused by:
Started by upstream project "Trigger" build number 100
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins13427032705245605211.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13601_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:22:22,587 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:22:22,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:22:22,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:22,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:22,594 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:22:22,594 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:22:22,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:22:22,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:22,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:22,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:22:22,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:22:22,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:22:22,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:22:22,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:22:22,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:22:22,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:22:22,916 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:22:22,917 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:22:22,917 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:22:22,918 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:22:22,918 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:22:22,919 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:22:22,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 323 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-11 01:22:22,933] [main] java.version = 11.0.16
[testng] 01:22:22,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:22:22,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:23,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-11_01-22-22.log]
[testng] 01:22:23,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-06-11 01:22:23,013] [main] testng.directory = /data
[testng] [2024-06-11 01:22:23,013] [main] testng.configDirectory = /config
[testng] [2024-06-11 01:22:23,029] [main] testng.multiplier = 1.0
[testng] [2024-06-11 01:22:23,031] [main] testng.in-memory = false
[testng] [2024-06-11 01:22:23,031] [main] testng.allow-missing = false
[testng] [2024-06-11 01:22:23,032] [main] user.language = en
[testng] [2024-06-11 01:22:23,032] [main] user.country = ${user.country}
[testng] [2024-06-11 01:22:23,032] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-11 01:22:24,298] [main] ----------------------------------------
[testng] [2024-06-11 01:22:24,298] [main] Total files: 21
[testng] [2024-06-11 01:22:24,298] [main] Scan time: 1.266 s (60 ms/file)
[testng] [2024-06-11 01:22:24,298] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-11 01:22:26,497] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt:
[testng] 01:22:26,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:22:26,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:26,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-11_01-22-26.log]
[testng] 01:22:26,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@468c510b - End of configuration.
[testng] [2024-06-11 01:22:26,559] [pool-1-thread-12] Initializing /data/stefan/001_q10.txt:
[testng] 01:22:26,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:22:26,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:26,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-11_01-22-26.log]
[testng] 01:22:26,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@feb82a - End of configuration.
[testng] [2024-06-11 01:22:26,680] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt:
[testng] 01:22:26,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:22:26,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:26,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-11_01-22-26.log]
[testng] 01:22:26,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7417ac15 - End of configuration.
[testng] [2024-06-11 01:22:26,713] [pool-1-thread-10] Initializing /data/stefan/001_q16.txt:
[testng] 01:22:26,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:22:26,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:26,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-11_01-22-26.log]
[testng] 01:22:26,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b124dd - End of configuration.
[testng] [2024-06-11 01:22:26,776] [pool-1-thread-9] Initializing /data/stefan/001_q11.txt:
[testng] 01:22:26,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:22:26,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:26,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-11_01-22-26.log]
[testng] 01:22:26,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f5290be - End of configuration.
[testng] [2024-06-11 01:22:26,865] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt:
[testng] 01:22:26,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:22:26,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:26,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-11_01-22-26.log]
[testng] 01:22:26,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6544835f - End of configuration.
[testng] [2024-06-11 01:22:26,900] [pool-1-thread-7] Initializing /data/stefan/001_q04.txt:
[testng] 01:22:26,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:22:26,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:26,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-11_01-22-26.log]
[testng] 01:22:26,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a4c1b64 - End of configuration.
[testng] [2024-06-11 01:22:26,929] [pool-1-thread-6] Initializing /data/stefan/001_q12.txt:
[testng] 01:22:26,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:22:26,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:26,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-11_01-22-26.log]
[testng] 01:22:26,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b936280 - End of configuration.
[testng] [2024-06-11 01:22:27,022] [pool-1-thread-5] Initializing /data/stefan/001_q06.txt:
[testng] 01:22:27,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:22:27,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:27,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-11_01-22-27.log]
[testng] 01:22:27,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@442fa434 - End of configuration.
[testng] [2024-06-11 01:22:27,060] [pool-1-thread-4] Initializing /data/stefan/001_q05.txt:
[testng] 01:22:27,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:22:27,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:27,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-11_01-22-27.log]
[testng] 01:22:27,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@561c3def - End of configuration.
[testng] [2024-06-11 01:22:27,091] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt:
[testng] 01:22:27,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:22:27,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:27,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-11_01-22-27.log]
[testng] 01:22:27,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dbef79a - End of configuration.
[testng] [2024-06-11 01:22:27,130] [pool-1-thread-2] Initializing /data/stefan/001_q18.txt:
[testng] 01:22:27,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:22:27,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:27,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-11_01-22-27.log]
[testng] 01:22:27,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@770fb4a5 - End of configuration.
[testng] [2024-06-11 01:22:29,770] [pool-1-thread-11] Initializing /data/stefan/001_q17.txt:
[testng] [2024-06-11 01:22:29,837] [pool-1-thread-1] Initializing /data/stefan/001_q01.txt:
[testng] [2024-06-11 01:22:29,861] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt:
[testng] [2024-06-11 01:22:29,917] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt:
[testng] [2024-06-11 01:22:29,952] [pool-1-thread-3] Initializing /data/stefan/001_q08.txt:
[testng] [2024-06-11 01:22:30,011] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS