Started by upstream project "BIOFORMATS-test-repo" build number 90
originally caused by:
Started by upstream project "Trigger" build number 101
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins8938490649255942146.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13787_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:28:04,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:28:04,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:28:04,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:28:04,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:28:04,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:28:04,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:28:04,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:28:04,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:28:04,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:28:04,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:28:04,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:28:04,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:28:05,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:28:05,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:28:05,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:28:05,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:28:05,126 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:28:05,126 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:28:05,126 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:28:05,126 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:28:05,126 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:28:05,127 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:28:05,127 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-12 01:28:05,136] [main] java.version = 17.0.2
[testng] 01:28:05,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:28:05,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:05,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-12_01-28-05.log]
[testng] 01:28:05,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-06-12 01:28:05,183] [main] testng.directory = /data
[testng] [2024-06-12 01:28:05,183] [main] testng.configDirectory = /config
[testng] [2024-06-12 01:28:05,192] [main] testng.multiplier = 1.0
[testng] [2024-06-12 01:28:05,193] [main] testng.in-memory = false
[testng] [2024-06-12 01:28:05,193] [main] testng.allow-missing = false
[testng] [2024-06-12 01:28:05,193] [main] user.language = en
[testng] [2024-06-12 01:28:05,193] [main] user.country = ${user.country}
[testng] [2024-06-12 01:28:05,193] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-12 01:28:05,544] [main] ----------------------------------------
[testng] [2024-06-12 01:28:05,544] [main] Total files: 21
[testng] [2024-06-12 01:28:05,544] [main] Scan time: 0.35 s (16 ms/file)
[testng] [2024-06-12 01:28:05,548] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-12 01:28:06,271] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA:
[testng] 01:28:06,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:28:06,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-12_01-28-06.log]
[testng] 01:28:06,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaa59a - End of configuration.
[testng] [2024-06-12 01:28:06,290] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA:
[testng] 01:28:06,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:28:06,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-12_01-28-06.log]
[testng] 01:28:06,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b12ea97 - End of configuration.
[testng] [2024-06-12 01:28:06,356] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA:
[testng] 01:28:06,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:28:06,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-12_01-28-06.log]
[testng] 01:28:06,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40222ab5 - End of configuration.
[testng] [2024-06-12 01:28:06,370] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA:
[testng] 01:28:06,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:28:06,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-12_01-28-06.log]
[testng] 01:28:06,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1045bef1 - End of configuration.
[testng] [2024-06-12 01:28:06,380] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA:
[testng] 01:28:06,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:28:06,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-12_01-28-06.log]
[testng] 01:28:06,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37108b4a - End of configuration.
[testng] [2024-06-12 01:28:06,391] [pool-1-thread-8] Initializing /data/samples/UBW8.TGA:
[testng] 01:28:06,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:28:06,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-12_01-28-06.log]
[testng] 01:28:06,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c5e4fd5 - End of configuration.
[testng] [2024-06-12 01:28:06,401] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA:
[testng] 01:28:06,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:28:06,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-12_01-28-06.log]
[testng] 01:28:06,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625d82e4 - End of configuration.
[testng] [2024-06-12 01:28:06,420] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA:
[testng] 01:28:06,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:28:06,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-12_01-28-06.log]
[testng] 01:28:06,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11dd0b6e - End of configuration.
[testng] [2024-06-12 01:28:06,431] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA:
[testng] 01:28:06,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:28:06,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-12_01-28-06.log]
[testng] 01:28:06,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6020a301 - End of configuration.
[testng] [2024-06-12 01:28:06,443] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA:
[testng] 01:28:06,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:28:06,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-12_01-28-06.log]
[testng] 01:28:06,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ce37081 - End of configuration.
[testng] [2024-06-12 01:28:06,456] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA:
[testng] 01:28:06,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:28:06,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-12_01-28-06.log]
[testng] 01:28:06,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16a59c48 - End of configuration.
[testng] [2024-06-12 01:28:06,474] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA:
[testng] 01:28:06,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:28:06,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:06,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-12_01-28-06.log]
[testng] 01:28:06,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132c2ea0 - End of configuration.
[testng] [2024-06-12 01:28:07,832] [pool-1-thread-5] Initializing /data/samples/CBW8.TGA:
[testng] [2024-06-12 01:28:07,845] [pool-1-thread-8] Initializing /data/samples/CTC16.TGA:
[testng] [2024-06-12 01:28:07,853] [pool-1-thread-11] Initializing /data/samples/FLAG_B32.TGA:
[testng] [2024-06-12 01:28:07,861] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA:
[testng] [2024-06-12 01:28:07,869] [pool-1-thread-10] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-06-12 01:28:07,878] [pool-1-thread-1] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-06-12 01:28:07,886] [pool-1-thread-6] Initializing /data/samples/FLAG_T16.TGA:
[testng] [2024-06-12 01:28:07,897] [pool-1-thread-12] Initializing /data/samples/XING_T32.TGA:
[testng] [2024-06-12 01:28:08,174] [pool-1-thread-2] Initializing /data/samples/UTC24.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS