Started by upstream project "BIOFORMATS-test-repo" build number 91
originally caused by:
Started by upstream project "Trigger" build number 102
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5141651608079295466.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_13929_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:23:02,816 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:23:02,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:23:02,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:23:02,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:23:02,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:23:02,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:23:02,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:23:02,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:23:02,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:23:02,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:23:02,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:23:02,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:23:03,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:23:03,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:23:03,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:23:03,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:23:03,048 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:23:03,049 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:23:03,049 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:23:03,049 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:23:03,049 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:23:03,050 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:23:03,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 229 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-13 01:23:03,060] [main] java.version = 21
[testng] 01:23:03,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:23:03,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:03,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-13_01-23-03.log]
[testng] 01:23:03,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-06-13 01:23:03,117] [main] testng.directory = /data
[testng] [2024-06-13 01:23:03,117] [main] testng.configDirectory = /config
[testng] [2024-06-13 01:23:03,126] [main] testng.multiplier = 1.0
[testng] [2024-06-13 01:23:03,127] [main] testng.in-memory = false
[testng] [2024-06-13 01:23:03,127] [main] testng.allow-missing = false
[testng] [2024-06-13 01:23:03,127] [main] user.language = en
[testng] [2024-06-13 01:23:03,127] [main] user.country = ${user.country}
[testng] [2024-06-13 01:23:03,127] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-13 01:23:04,262] [main] ----------------------------------------
[testng] [2024-06-13 01:23:04,262] [main] Total files: 21
[testng] [2024-06-13 01:23:04,262] [main] Scan time: 1.134 s (54 ms/file)
[testng] [2024-06-13 01:23:04,263] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-13 01:23:06,571] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt:
[testng] 01:23:06,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:23:06,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-13_01-23-06.log]
[testng] 01:23:06,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4763f8a9 - End of configuration.
[testng] [2024-06-13 01:23:06,636] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt:
[testng] 01:23:06,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:23:06,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-13_01-23-06.log]
[testng] 01:23:06,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@522ef87 - End of configuration.
[testng] [2024-06-13 01:23:06,711] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt:
[testng] 01:23:06,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:23:06,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-13_01-23-06.log]
[testng] 01:23:06,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a118fae - End of configuration.
[testng] [2024-06-13 01:23:06,758] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt:
[testng] 01:23:06,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:23:06,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-13_01-23-06.log]
[testng] 01:23:06,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2765e0c - End of configuration.
[testng] [2024-06-13 01:23:06,824] [pool-1-thread-9] Initializing /data/stefan/001_q06.txt:
[testng] 01:23:06,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:23:06,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-13_01-23-06.log]
[testng] 01:23:06,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4df5ba - End of configuration.
[testng] [2024-06-13 01:23:06,855] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt:
[testng] 01:23:06,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:23:06,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-13_01-23-06.log]
[testng] 01:23:06,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595b920f - End of configuration.
[testng] [2024-06-13 01:23:06,882] [pool-1-thread-7] Initializing /data/stefan/001_q03.txt:
[testng] 01:23:06,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:23:06,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-13_01-23-06.log]
[testng] 01:23:06,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d396cc - End of configuration.
[testng] [2024-06-13 01:23:06,912] [pool-1-thread-6] Initializing /data/stefan/001_q10.txt:
[testng] 01:23:06,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:23:06,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-13_01-23-06.log]
[testng] 01:23:06,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@334054d - End of configuration.
[testng] [2024-06-13 01:23:06,981] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt:
[testng] 01:23:06,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:23:06,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:06,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-13_01-23-06.log]
[testng] 01:23:06,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a158e7 - End of configuration.
[testng] [2024-06-13 01:23:07,021] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt:
[testng] 01:23:07,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:23:07,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:07,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-13_01-23-07.log]
[testng] 01:23:07,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43a72390 - End of configuration.
[testng] [2024-06-13 01:23:07,105] [pool-1-thread-3] Initializing /data/stefan/001_q18.txt:
[testng] 01:23:07,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:23:07,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:07,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-13_01-23-07.log]
[testng] 01:23:07,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b4d909c - End of configuration.
[testng] [2024-06-13 01:23:07,193] [pool-1-thread-2] Initializing /data/stefan/001_q01.txt:
[testng] 01:23:07,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:23:07,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:07,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-13_01-23-07.log]
[testng] 01:23:07,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19dcf47c - End of configuration.
[testng] [2024-06-13 01:23:10,115] [pool-1-thread-11] Initializing /data/stefan/001_q05.txt:
[testng] [2024-06-13 01:23:10,155] [pool-1-thread-2] Initializing /data/stefan/001_q17.txt:
[testng] [2024-06-13 01:23:10,252] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt:
[testng] [2024-06-13 01:23:10,278] [pool-1-thread-1] Initializing /data/stefan/001_q07.txt:
[testng] [2024-06-13 01:23:10,376] [pool-1-thread-6] Initializing /data/stefan/001_q09.txt:
[testng] [2024-06-13 01:23:10,463] [pool-1-thread-10] Initializing /data/stefan/001_q16.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 12 seconds
Finished: SUCCESS