Started by upstream project "BIOFORMATS-test-repo" build number 92
originally caused by:
 Started by upstream project "Trigger" build number 103
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8078598424235697120.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14144_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:45:42,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:45:42,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 01:45:42,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:45:42,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:45:42,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:45:42,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:45:42,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:45:42,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:45:42,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:45:42,426 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:45:42,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:45:42,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:45:42,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:45:42,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:45:42,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:45:42,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:45:42,747 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:45:42,747 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:45:42,748 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:45:42,748 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:45:42,748 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 01:45:42,749 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 01:45:42,749 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 323 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-14 01:45:42,760] [main] java.version = 1.8.0_342
   [testng] 01:45:42,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:45:42,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:42,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-14_01-45-42.log]
   [testng] 01:45:42,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-06-14 01:45:42,813] [main] testng.directory = /data
   [testng] [2024-06-14 01:45:42,813] [main] testng.configDirectory = /config
   [testng] [2024-06-14 01:45:42,827] [main] testng.multiplier = 1.0
   [testng] [2024-06-14 01:45:42,827] [main] testng.in-memory = false
   [testng] [2024-06-14 01:45:42,827] [main] testng.allow-missing = false
   [testng] [2024-06-14 01:45:42,827] [main] user.language = en
   [testng] [2024-06-14 01:45:42,827] [main] user.country = ${user.country}
   [testng] [2024-06-14 01:45:42,827] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-06-14 01:45:43,839] [main] ----------------------------------------
   [testng] [2024-06-14 01:45:43,839] [main] Total files: 25
   [testng] [2024-06-14 01:45:43,839] [main] Scan time: 1.012 s (40 ms/file)
   [testng] [2024-06-14 01:45:43,839] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-14 01:45:45,290] [pool-1-thread-1] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: 
   [testng] 01:45:45,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:45:45,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-14_01-45-45.log]
   [testng] 01:45:45,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a0ec2f - End of configuration.
   [testng] [2024-06-14 01:45:45,312] [pool-1-thread-12] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: 
   [testng] 01:45:45,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:45:45,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-14_01-45-45.log]
   [testng] 01:45:45,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c638eb2 - End of configuration.
   [testng] [2024-06-14 01:45:45,323] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Zucchini.dm2: 
   [testng] 01:45:45,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:45:45,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-14_01-45-45.log]
   [testng] 01:45:45,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@466e8fd - End of configuration.
   [testng] [2024-06-14 01:45:45,360] [pool-1-thread-9] Initializing /data/pang/signed: 
   [testng] 01:45:45,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:45:45,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-14_01-45-45.log]
   [testng] 01:45:45,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c40181f - End of configuration.
   [testng] [2024-06-14 01:45:45,467] [pool-1-thread-10] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: 
   [testng] 01:45:45,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:45:45,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-14_01-45-45.log]
   [testng] 01:45:45,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fde2569 - End of configuration.
   [testng] [2024-06-14 01:45:45,495] [pool-1-thread-7] Initializing /data/pang/grating025k.dm2: 
   [testng] 01:45:45,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:45:45,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-14_01-45-45.log]
   [testng] 01:45:45,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff4f51e - End of configuration.
   [testng] [2024-06-14 01:45:45,529] [pool-1-thread-8] Initializing /data/pang/10500x-o4: 
   [testng] 01:45:45,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:45:45,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-14_01-45-45.log]
   [testng] 01:45:45,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44b4ab3e - End of configuration.
   [testng] [2024-06-14 01:45:45,552] [pool-1-thread-6] Initializing /data/imagic/not read correctly/Zucchini_preview.png: 
   [testng] 01:45:45,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:45:45,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-14_01-45-45.log]
   [testng] 01:45:45,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@814354c - End of configuration.
   [testng] [2024-06-14 01:45:45,571] [pool-1-thread-5] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: 
   [testng] 01:45:45,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:45:45,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-14_01-45-45.log]
   [testng] 01:45:45,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8ce233b - End of configuration.
   [testng] [2024-06-14 01:45:45,599] [pool-1-thread-4] Initializing /data/imagic/TEM 10118.dm2: 
   [testng] 01:45:45,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:45:45,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-14_01-45-45.log]
   [testng] 01:45:45,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b24f2d - End of configuration.
   [testng] [2024-06-14 01:45:45,619] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: 
   [testng] 01:45:45,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:45:45,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-14_01-45-45.log]
   [testng] 01:45:45,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14370f2d - End of configuration.
   [testng] [2024-06-14 01:45:45,633] [pool-1-thread-2] Initializing /data/pang/unproc-auto: 
   [testng] 01:45:45,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:45:45,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:45,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-14_01-45-45.log]
   [testng] 01:45:45,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19f58725 - End of configuration.
   [testng] [2024-06-14 01:45:47,873] [pool-1-thread-6] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: 
   [testng] [2024-06-14 01:45:47,876] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: 
   [testng] [2024-06-14 01:45:47,887] [pool-1-thread-11] Initializing /data/pang/DLMeD2E1_010500x03.dm2: 
   [testng] [2024-06-14 01:45:47,902] [pool-1-thread-5] Initializing /data/imagic/1-1.dm2: 
   [testng] [2024-06-14 01:45:47,912] [pool-1-thread-8] Initializing /data/imagic/13008.dm2: 
   [testng] [2024-06-14 01:45:47,924] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 954, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS