Started by upstream project "BIOFORMATS-test-repo" build number 92
originally caused by:
Started by upstream project "Trigger" build number 103
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5755808287224399958.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14176_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:17:49,923 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:17:49,925 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:17:49,925 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:17:49,926 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:17:49,926 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:17:49,927 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:17:49,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:17:49,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:17:49,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:17:49,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:17:49,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:17:49,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:17:50,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:17:50,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:17:50,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:17:50,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:17:50,208 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:17:50,208 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:17:50,208 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:17:50,209 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:17:50,209 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:17:50,210 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:17:50,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-14 02:17:50,220] [main] java.version = 1.8.0_342
[testng] 02:17:50,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:17:50,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:50,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-14_02-17-50.log]
[testng] 02:17:50,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-06-14 02:17:50,273] [main] testng.directory = /data
[testng] [2024-06-14 02:17:50,273] [main] testng.configDirectory = /config
[testng] [2024-06-14 02:17:50,288] [main] testng.multiplier = 1.0
[testng] [2024-06-14 02:17:50,288] [main] testng.in-memory = false
[testng] [2024-06-14 02:17:50,289] [main] testng.allow-missing = false
[testng] [2024-06-14 02:17:50,289] [main] user.language = en
[testng] [2024-06-14 02:17:50,289] [main] user.country = ${user.country}
[testng] [2024-06-14 02:17:50,289] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-06-14 02:17:51,063] [main] ----------------------------------------
[testng] [2024-06-14 02:17:51,063] [main] Total files: 14
[testng] [2024-06-14 02:17:51,063] [main] Scan time: 0.774 s (55 ms/file)
[testng] [2024-06-14 02:17:51,063] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-14 02:17:57,244] [pool-1-thread-1] Initializing /data/aaron/olympus_fv500.tif:
[testng] 02:17:57,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:17:57,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-14_02-17-57.log]
[testng] 02:17:57,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32cd602d - End of configuration.
[testng] [2024-06-14 02:17:57,372] [pool-1-thread-12] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng] 02:17:57,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:17:57,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-14_02-17-57.log]
[testng] 02:17:57,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d42c481 - End of configuration.
[testng] [2024-06-14 02:17:57,450] [pool-1-thread-11] Initializing /data/timg/eric-one-3d.tif:
[testng] 02:17:57,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:17:57,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-14_02-17-57.log]
[testng] 02:17:57,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1377d263 - End of configuration.
[testng] [2024-06-14 02:17:57,524] [pool-1-thread-10] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 02:17:57,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:17:57,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-14_02-17-57.log]
[testng] 02:17:57,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f9e35e4 - End of configuration.
[testng] [2024-06-14 02:17:57,622] [pool-1-thread-9] Initializing /data/timg/LiveOne.tif:
[testng] 02:17:57,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:17:57,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-14_02-17-57.log]
[testng] 02:17:57,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72fad930 - End of configuration.
[testng] [2024-06-14 02:17:57,659] [pool-1-thread-8] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 02:17:57,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:17:57,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-14_02-17-57.log]
[testng] 02:17:57,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d834c - End of configuration.
[testng] [2024-06-14 02:17:57,738] [pool-1-thread-7] Initializing /data/timg/eric-three-projection.tif:
[testng] 02:17:57,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:17:57,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-14_02-17-57.log]
[testng] 02:17:57,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12796489 - End of configuration.
[testng] [2024-06-14 02:17:57,779] [pool-1-thread-6] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 02:17:57,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:17:57,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-14_02-17-57.log]
[testng] 02:17:57,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a37209a - End of configuration.
[testng] [2024-06-14 02:17:57,814] [pool-1-thread-5] Initializing /data/timg/eric-one.tif:
[testng] 02:17:57,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:17:57,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-14_02-17-57.log]
[testng] 02:17:57,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6af7cb71 - End of configuration.
[testng] [2024-06-14 02:17:57,894] [pool-1-thread-4] Initializing /data/timg/LiveTwo.tif:
[testng] 02:17:57,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:17:57,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-14_02-17-57.log]
[testng] 02:17:57,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@549dc3d7 - End of configuration.
[testng] [2024-06-14 02:17:57,988] [pool-1-thread-3] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 02:17:57,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:17:57,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:57,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-14_02-17-57.log]
[testng] 02:17:57,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65dd2bd5 - End of configuration.
[testng] [2024-06-14 02:17:58,079] [pool-1-thread-2] Initializing /data/timg/eric-three.tif:
[testng] 02:17:58,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:17:58,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:17:58,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-14_02-17-58.log]
[testng] 02:17:58,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dc2e647 - End of configuration.
[testng] [2024-06-14 02:18:00,179] [pool-1-thread-9] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS