Started by upstream project "BIOFORMATS-test-repo" build number 92
originally caused by:
Started by upstream project "Trigger" build number 103
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins9838251996130302487.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14220_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:40:08,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:40:08,718 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:40:08,718 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:40:08,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:40:08,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:40:08,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:40:08,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:40:08,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:40:08,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:40:08,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:40:08,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:40:08,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:40:08,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:40:08,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:40:08,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:40:08,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:40:08,985 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:40:08,985 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:40:08,985 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:40:08,986 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:40:08,986 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:40:08,987 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:40:08,987 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-14 02:40:08,997] [main] java.version = 1.8.0_342
[testng] 02:40:09,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:40:09,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:09,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-14_02-40-09.log]
[testng] 02:40:09,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-06-14 02:40:09,051] [main] testng.directory = /data
[testng] [2024-06-14 02:40:09,052] [main] testng.configDirectory = /config
[testng] [2024-06-14 02:40:09,067] [main] testng.multiplier = 1.0
[testng] [2024-06-14 02:40:09,068] [main] testng.in-memory = false
[testng] [2024-06-14 02:40:09,068] [main] testng.allow-missing = false
[testng] [2024-06-14 02:40:09,068] [main] user.language = en
[testng] [2024-06-14 02:40:09,068] [main] user.country = ${user.country}
[testng] [2024-06-14 02:40:09,068] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-06-14 02:40:18,520] [main] ----------------------------------------
[testng] [2024-06-14 02:40:18,520] [main] Total files: 944
[testng] [2024-06-14 02:40:18,521] [main] Scan time: 9.451 s (10 ms/file)
[testng] [2024-06-14 02:40:18,521] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-14 02:40:48,349] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] 02:40:48,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:40:48,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-14_02-40-48.log]
[testng] 02:40:48,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52eb8ccb - End of configuration.
[testng] [2024-06-14 02:40:48,392] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] 02:40:48,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:40:48,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-14_02-40-48.log]
[testng] 02:40:48,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50b8330a - End of configuration.
[testng] [2024-06-14 02:40:48,433] [pool-1-thread-11] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 02:40:48,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:40:48,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-14_02-40-48.log]
[testng] 02:40:48,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ae3ba3d - End of configuration.
[testng] [2024-06-14 02:40:48,461] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif:
[testng] 02:40:48,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:40:48,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-14_02-40-48.log]
[testng] 02:40:48,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4177cd67 - End of configuration.
[testng] [2024-06-14 02:40:48,515] [pool-1-thread-9] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 02:40:48,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:40:48,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-14_02-40-48.log]
[testng] 02:40:48,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735de0e2 - End of configuration.
[testng] [2024-06-14 02:40:48,550] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] 02:40:48,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:40:48,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-14_02-40-48.log]
[testng] 02:40:48,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a38f355 - End of configuration.
[testng] [2024-06-14 02:40:48,594] [pool-1-thread-7] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] 02:40:48,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:40:48,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-14_02-40-48.log]
[testng] 02:40:48,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ad80861 - End of configuration.
[testng] [2024-06-14 02:40:48,632] [pool-1-thread-6] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 02:40:48,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:40:48,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-14_02-40-48.log]
[testng] 02:40:48,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@738f2d12 - End of configuration.
[testng] [2024-06-14 02:40:48,690] [pool-1-thread-5] Initializing /data/brian/Series002_z01.tif:
[testng] 02:40:48,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:40:48,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-14_02-40-48.log]
[testng] 02:40:48,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bbb35cf - End of configuration.
[testng] [2024-06-14 02:40:48,736] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 02:40:48,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:40:48,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-14_02-40-48.log]
[testng] 02:40:48,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70816ed - End of configuration.
[testng] [2024-06-14 02:40:48,781] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] 02:40:48,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:40:48,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-14_02-40-48.log]
[testng] 02:40:48,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36db5936 - End of configuration.
[testng] [2024-06-14 02:40:48,837] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 02:40:48,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:40:48,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:48,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-14_02-40-48.log]
[testng] 02:40:48,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@723fb45b - End of configuration.
[testng] [2024-06-14 02:40:50,698] [pool-1-thread-11] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] [2024-06-14 02:40:50,721] [pool-1-thread-6] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] [2024-06-14 02:40:55,784] [pool-1-thread-8] Initializing /data/brian/Series002_z00_ch00.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 minutes 42 seconds
Finished: SUCCESS