Started by upstream project "BIOFORMATS-test-repo" build number 92
originally caused by:
 Started by upstream project "Trigger" build number 103
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11757978068605120683.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14223_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:45:55,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:45:55,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 02:45:55,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:45:55,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:45:55,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:45:55,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:45:55,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:45:55,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:45:55,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:45:55,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:45:55,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:45:55,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:45:56,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:45:56,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:45:56,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:45:56,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:45:56,123 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:45:56,123 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:45:56,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:45:56,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:45:56,124 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 02:45:56,125 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 02:45:56,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-14 02:45:56,135] [main] java.version = 1.8.0_342
   [testng] 02:45:56,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:45:56,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:56,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-14_02-45-56.log]
   [testng] 02:45:56,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-06-14 02:45:56,186] [main] testng.directory = /data
   [testng] [2024-06-14 02:45:56,186] [main] testng.configDirectory = /config
   [testng] [2024-06-14 02:45:56,198] [main] testng.multiplier = 1.0
   [testng] [2024-06-14 02:45:56,198] [main] testng.in-memory = false
   [testng] [2024-06-14 02:45:56,198] [main] testng.allow-missing = false
   [testng] [2024-06-14 02:45:56,199] [main] user.language = en
   [testng] [2024-06-14 02:45:56,199] [main] user.country = ${user.country}
   [testng] [2024-06-14 02:45:56,199] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-06-14 02:45:56,709] [main] ----------------------------------------
   [testng] [2024-06-14 02:45:56,710] [main] Total files: 11
   [testng] [2024-06-14 02:45:56,710] [main] Scan time: 0.51 s (46 ms/file)
   [testng] [2024-06-14 02:45:56,710] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-14 02:45:58,394] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed001.jp2: 
   [testng] 02:45:58,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:45:58,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-14_02-45-58.log]
   [testng] 02:45:58,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@737d2026 - End of configuration.
   [testng] [2024-06-14 02:45:58,517] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008G.tif: 
   [testng] 02:45:58,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:45:58,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-14_02-45-58.log]
   [testng] 02:45:58,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@338fc051 - End of configuration.
   [testng] [2024-06-14 02:45:58,652] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed007.gif: 
   [testng] 02:45:58,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:45:58,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-14_02-45-58.log]
   [testng] 02:45:58,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2abe6ce0 - End of configuration.
   [testng] [2024-06-14 02:45:58,667] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png: 
   [testng] 02:45:58,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:45:58,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-14_02-45-58.log]
   [testng] 02:45:58,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1034a66c - End of configuration.
   [testng] [2024-06-14 02:45:58,678] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed003.jpg: 
   [testng] 02:45:58,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:45:58,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-14_02-45-58.log]
   [testng] 02:45:58,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4816112f - End of configuration.
   [testng] [2024-06-14 02:45:58,734] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed005.bmp: 
   [testng] 02:45:58,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:45:58,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-14_02-45-58.log]
   [testng] 02:45:58,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1207fa2e - End of configuration.
   [testng] [2024-06-14 02:45:58,743] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif: 
   [testng] 02:45:58,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:45:58,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-14_02-45-58.log]
   [testng] 02:45:58,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c09d2ff - End of configuration.
   [testng] [2024-06-14 02:45:58,794] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed008B.tif: 
   [testng] 02:45:58,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:45:58,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-14_02-45-58.log]
   [testng] 02:45:58,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b962a0b - End of configuration.
   [testng] [2024-06-14 02:45:58,847] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed008.jp2: 
   [testng] 02:45:58,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:45:58,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-14_02-45-58.log]
   [testng] 02:45:58,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3104242d - End of configuration.
   [testng] [2024-06-14 02:45:58,943] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed004.tif: 
   [testng] 02:45:58,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:45:58,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:58,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-14_02-45-58.log]
   [testng] 02:45:58,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cdf31e - End of configuration.
   [testng] [2024-06-14 02:45:59,017] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed008R.tif: 
   [testng] 02:45:59,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:45:59,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:59,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-14_02-45-59.log]
   [testng] 02:45:59,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eef0ee4 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 19 seconds
Finished: SUCCESS