Started by upstream project "BIOFORMATS-test-repo" build number 94
originally caused by:
Started by upstream project "Trigger" build number 105
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13548552208976606190.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14406_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:21:28,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:28,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:21:28,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:28,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:28,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:28,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:28,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:28,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:28,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:28,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:28,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:28,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:29,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:29,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:29,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:29,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:29,069 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:29,069 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:29,069 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:29,070 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:29,070 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:21:29,070 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:21:29,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-16 01:21:29,078] [main] java.version = 17.0.2
[testng] 01:21:29,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:29,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:29,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-16_01-21-29.log]
[testng] 01:21:29,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-06-16 01:21:29,123] [main] testng.directory = /data
[testng] [2024-06-16 01:21:29,123] [main] testng.configDirectory = /config
[testng] [2024-06-16 01:21:29,131] [main] testng.multiplier = 1.0
[testng] [2024-06-16 01:21:29,132] [main] testng.in-memory = false
[testng] [2024-06-16 01:21:29,132] [main] testng.allow-missing = false
[testng] [2024-06-16 01:21:29,132] [main] user.language = en
[testng] [2024-06-16 01:21:29,132] [main] user.country = ${user.country}
[testng] [2024-06-16 01:21:29,132] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-16 01:21:29,532] [main] ----------------------------------------
[testng] [2024-06-16 01:21:29,532] [main] Total files: 36
[testng] [2024-06-16 01:21:29,532] [main] Scan time: 0.4 s (11 ms/file)
[testng] [2024-06-16 01:21:29,532] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-16 01:21:31,027] [pool-1-thread-1] Initializing /data/generated/mri-stack25.pcx:
[testng] 01:21:31,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:21:31,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-16_01-21-31.log]
[testng] 01:21:31,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f2ff747 - End of configuration.
[testng] [2024-06-16 01:21:31,084] [pool-1-thread-12] Initializing /data/generated/mri-stack24.pcx:
[testng] 01:21:31,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:21:31,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-16_01-21-31.log]
[testng] 01:21:31,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fb0a956 - End of configuration.
[testng] [2024-06-16 01:21:31,090] [pool-1-thread-11] Initializing /data/generated/mri-stack17.pcx:
[testng] 01:21:31,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:21:31,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-16_01-21-31.log]
[testng] 01:21:31,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0dea99 - End of configuration.
[testng] [2024-06-16 01:21:31,096] [pool-1-thread-10] Initializing /data/generated/mri-stack16.pcx:
[testng] 01:21:31,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:21:31,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-16_01-21-31.log]
[testng] 01:21:31,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@295a7e88 - End of configuration.
[testng] [2024-06-16 01:21:31,102] [pool-1-thread-9] Initializing /data/generated/mri-stack20.pcx:
[testng] 01:21:31,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:21:31,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-16_01-21-31.log]
[testng] 01:21:31,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346d6747 - End of configuration.
[testng] [2024-06-16 01:21:31,108] [pool-1-thread-8] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng] 01:21:31,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:21:31,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-16_01-21-31.log]
[testng] 01:21:31,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ce031ac - End of configuration.
[testng] [2024-06-16 01:21:31,117] [pool-1-thread-7] Initializing /data/generated/mri-stack6.pcx:
[testng] 01:21:31,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:21:31,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-16_01-21-31.log]
[testng] 01:21:31,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@705c8ed6 - End of configuration.
[testng] [2024-06-16 01:21:31,123] [pool-1-thread-6] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] 01:21:31,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:21:31,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-16_01-21-31.log]
[testng] 01:21:31,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3bd1f5 - End of configuration.
[testng] [2024-06-16 01:21:31,131] [pool-1-thread-5] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] 01:21:31,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:21:31,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-16_01-21-31.log]
[testng] 01:21:31,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d51cb2e - End of configuration.
[testng] [2024-06-16 01:21:31,141] [pool-1-thread-4] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng] 01:21:31,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:21:31,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-16_01-21-31.log]
[testng] 01:21:31,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6afa9ab1 - End of configuration.
[testng] [2024-06-16 01:21:31,150] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx:
[testng] 01:21:31,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:21:31,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-16_01-21-31.log]
[testng] 01:21:31,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386870bb - End of configuration.
[testng] [2024-06-16 01:21:31,155] [pool-1-thread-2] Initializing /data/generated/mri-stack23.pcx:
[testng] 01:21:31,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:21:31,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:31,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-16_01-21-31.log]
[testng] 01:21:31,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9ec837 - End of configuration.
[testng] [2024-06-16 01:21:33,492] [pool-1-thread-12] Initializing /data/generated/mri-stack11.pcx:
[testng] [2024-06-16 01:21:33,497] [pool-1-thread-2] Initializing /data/generated/mri-stack7.pcx:
[testng] [2024-06-16 01:21:33,500] [pool-1-thread-7] Initializing /data/generated/mri-stack4.pcx:
[testng] [2024-06-16 01:21:33,503] [pool-1-thread-9] Initializing /data/generated/mri-stack3.pcx:
[testng] [2024-06-16 01:21:33,506] [pool-1-thread-10] Initializing /data/generated/mri-stack19.pcx:
[testng] [2024-06-16 01:21:33,510] [pool-1-thread-1] Initializing /data/generated/mri-stack2.pcx:
[testng] [2024-06-16 01:21:33,514] [pool-1-thread-3] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-06-16 01:21:33,517] [pool-1-thread-11] Initializing /data/generated/mri-stack15.pcx:
[testng] [2024-06-16 01:21:33,521] [pool-1-thread-8] Initializing /data/generated/mri-stack14.pcx:
[testng] [2024-06-16 01:21:33,525] [pool-1-thread-4] Initializing /data/generated/mri-stack26.pcx:
[testng] [2024-06-16 01:21:33,528] [pool-1-thread-5] Initializing /data/generated/mri-stack10.pcx:
[testng] [2024-06-16 01:21:33,531] [pool-1-thread-6] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] [2024-06-16 01:21:33,732] [pool-1-thread-3] Initializing /data/generated/mri-stack0.pcx:
[testng] [2024-06-16 01:21:33,739] [pool-1-thread-1] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] [2024-06-16 01:21:33,745] [pool-1-thread-8] Initializing /data/generated/mri-stack18.pcx:
[testng] [2024-06-16 01:21:33,794] [pool-1-thread-4] Initializing /data/generated/mri-stack8.pcx:
[testng] [2024-06-16 01:21:33,798] [pool-1-thread-7] Initializing /data/generated/mri-stack21.pcx:
[testng] [2024-06-16 01:21:33,801] [pool-1-thread-10] Initializing /data/generated/mri-stack5.pcx:
[testng] [2024-06-16 01:21:33,806] [pool-1-thread-5] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-06-16 01:21:33,809] [pool-1-thread-12] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] [2024-06-16 01:21:33,835] [pool-1-thread-9] Initializing /data/generated/mri-stack22.pcx:
[testng] [2024-06-16 01:21:33,844] [pool-1-thread-11] Initializing /data/generated/mri-stack13.pcx:
[testng] [2024-06-16 01:21:33,848] [pool-1-thread-2] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS