Started by upstream project "BIOFORMATS-test-repo" build number 94
originally caused by:
Started by upstream project "Trigger" build number 105
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins5864698560961237744.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14416_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:21:58,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:58,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:21:58,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:58,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:58,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:58,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:58,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:58,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:58,147 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:58,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:58,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:58,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:58,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:58,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:58,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:58,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:58,415 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:58,416 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:58,416 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:58,417 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:58,417 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:21:58,418 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:21:58,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 271 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-16 01:21:58,433] [main] java.version = 17.0.2
[testng] 01:21:58,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:58,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:58,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-16_01-21-58.log]
[testng] 01:21:58,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-06-16 01:21:58,508] [main] testng.directory = /data
[testng] [2024-06-16 01:21:58,509] [main] testng.configDirectory = /config
[testng] [2024-06-16 01:21:58,522] [main] testng.multiplier = 1.0
[testng] [2024-06-16 01:21:58,523] [main] testng.in-memory = false
[testng] [2024-06-16 01:21:58,523] [main] testng.allow-missing = false
[testng] [2024-06-16 01:21:58,523] [main] user.language = en
[testng] [2024-06-16 01:21:58,523] [main] user.country = ${user.country}
[testng] [2024-06-16 01:21:58,523] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-16 01:22:13,199] [main] ----------------------------------------
[testng] [2024-06-16 01:22:13,199] [main] Total files: 283
[testng] [2024-06-16 01:22:13,200] [main] Scan time: 14.676 s (51 ms/file)
[testng] [2024-06-16 01:22:13,200] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-16 01:30:18,426] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] 01:30:18,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:30:18,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:18,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-16_01-30-18.log]
[testng] 01:30:18,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55bdf30c - End of configuration.
[testng] [2024-06-16 01:30:18,474] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] 01:30:18,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:30:18,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:18,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-16_01-30-18.log]
[testng] 01:30:18,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ced4a99 - End of configuration.
[testng] [2024-06-16 01:30:18,572] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:30:18,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:30:18,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:18,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-16_01-30-18.log]
[testng] 01:30:18,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eea36a3 - End of configuration.
[testng] [2024-06-16 01:30:18,648] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] 01:30:18,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:30:18,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:18,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-16_01-30-18.log]
[testng] 01:30:18,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f807767 - End of configuration.
[testng] [2024-06-16 01:30:18,778] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] 01:30:18,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:30:18,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:18,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-16_01-30-18.log]
[testng] 01:30:18,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cff0c00 - End of configuration.
[testng] [2024-06-16 01:30:18,852] [pool-1-thread-8] Initializing /data/qa-17270/image1.oir:
[testng] 01:30:18,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:30:18,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:18,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-16_01-30-18.log]
[testng] 01:30:18,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f6325d - End of configuration.
[testng] [2024-06-16 01:30:18,926] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir:
[testng] 01:30:18,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:30:18,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:18,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-16_01-30-18.log]
[testng] 01:30:18,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2cd835 - End of configuration.
[testng] [2024-06-16 01:30:34,628] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] 01:30:34,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:30:34,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:34,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-16_01-30-34.log]
[testng] 01:30:34,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50ecfb31 - End of configuration.
[testng] [2024-06-16 01:30:34,675] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 01:30:34,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:30:34,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:34,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-16_01-30-34.log]
[testng] 01:30:34,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6353302f - End of configuration.
[testng] [2024-06-16 01:30:34,695] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] 01:30:34,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:30:34,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:34,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-16_01-30-34.log]
[testng] 01:30:34,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff06525 - End of configuration.
[testng] [2024-06-16 01:30:34,785] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] 01:30:34,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:30:34,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:34,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-16_01-30-34.log]
[testng] 01:30:34,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78c31ac6 - End of configuration.
[testng] [2024-06-16 01:30:34,829] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] 01:30:34,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:30:34,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:34,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-16_01-30-34.log]
[testng] 01:30:34,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae10945 - End of configuration.
[testng] [2024-06-16 01:30:37,860] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-06-16 01:30:38,050] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-06-16 01:30:38,495] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-06-16 01:30:38,576] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-06-16 01:30:38,618] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-06-16 01:30:38,646] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-06-16 01:30:38,732] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-06-16 01:30:38,823] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-06-16 01:30:38,999] [pool-1-thread-3] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-06-16 01:30:40,423] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-06-16 01:30:40,825] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-06-16 01:30:42,392] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-06-16 01:30:42,442] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-06-16 01:30:42,603] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-06-16 01:30:43,175] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-06-16 01:30:43,365] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-06-16 01:30:43,466] [pool-1-thread-11] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-06-16 01:31:30,353] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-06-16 01:31:30,476] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-06-16 01:31:31,610] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-06-16 01:31:31,771] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-06-16 01:31:31,938] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-06-16 01:31:32,367] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-06-16 01:31:32,516] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-06-16 01:31:33,086] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-06-16 01:31:33,514] [pool-1-thread-4] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-06-16 01:31:33,588] [pool-1-thread-10] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-06-16 01:31:38,189] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-06-16 01:31:38,572] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-06-16 01:31:38,755] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-06-16 01:31:38,852] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-06-16 01:31:39,344] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-06-16 01:31:40,231] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-06-16 01:31:41,186] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-06-16 01:31:41,946] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-06-16 01:31:42,004] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-06-16 01:31:42,491] [pool-1-thread-1] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-06-16 01:31:42,999] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-06-16 01:31:43,108] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-06-16 01:31:43,344] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-06-16 01:31:43,939] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-06-16 01:31:44,089] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-06-16 01:31:44,463] [pool-1-thread-9] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-06-16 01:31:44,592] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-06-16 01:31:45,026] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-06-16 01:31:45,598] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-06-16 01:31:45,962] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-06-16 01:31:46,296] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-06-16 01:31:46,418] [pool-1-thread-2] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-06-16 01:31:46,551] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-06-16 01:31:46,610] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-06-16 01:31:46,960] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-06-16 01:31:47,410] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-06-16 01:31:47,745] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-06-16 01:31:48,073] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-06-16 01:31:48,218] [pool-1-thread-12] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-06-16 01:32:14,710] [pool-1-thread-1] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-06-16 01:32:15,173] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-06-16 01:32:15,533] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-06-16 01:32:15,691] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-06-16 01:32:15,735] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-06-16 01:32:16,767] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-06-16 01:32:17,250] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-06-16 01:32:17,526] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-06-16 01:32:17,667] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-06-16 01:32:18,119] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-06-16 01:32:18,427] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-06-16 01:32:18,610] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-06-16 01:32:19,474] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-06-16 01:32:19,624] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-06-16 01:32:19,795] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-06-16 01:32:19,873] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-06-16 01:32:19,952] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-06-16 01:32:20,461] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-06-16 01:32:20,885] [pool-1-thread-8] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-06-16 01:32:22,024] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-06-16 01:32:22,266] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-06-16 01:32:22,390] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-06-16 01:32:22,544] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-06-16 01:32:22,622] [pool-1-thread-5] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-06-16 01:32:23,087] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-06-16 01:32:23,611] [pool-1-thread-2] Initializing /data/qa-17335/1.oir:
[testng] [2024-06-16 01:32:23,805] [pool-1-thread-9] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-06-16 01:32:24,072] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-06-16 01:32:24,349] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-06-16 01:32:24,554] [pool-1-thread-5] Initializing /data/olympus/XYZt.oir:
[testng] [2024-06-16 01:32:25,730] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-06-16 01:32:25,880] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-06-16 01:32:26,677] [pool-1-thread-1] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-06-16 01:32:26,772] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-06-16 01:32:27,187] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-06-16 01:32:27,914] [pool-1-thread-6] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-06-16 01:32:48,166] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-06-16 01:32:52,580] [pool-1-thread-3] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-06-16 01:32:52,627] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-06-16 01:32:52,814] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-06-16 01:32:52,982] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-06-16 01:32:53,077] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-06-16 01:32:53,734] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-06-16 01:32:54,104] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-06-16 01:32:54,329] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-06-16 01:32:54,548] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-06-16 01:32:55,201] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-06-16 01:32:55,542] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-06-16 01:32:56,083] [pool-1-thread-1] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-06-16 01:32:56,168] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-06-16 01:32:56,983] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-06-16 01:32:57,615] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-06-16 01:32:57,680] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-06-16 01:32:58,359] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-06-16 01:32:58,612] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-06-16 01:32:59,439] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-06-16 01:32:59,560] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-06-16 01:32:59,861] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-06-16 01:33:00,038] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-06-16 01:33:00,939] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-06-16 01:33:01,365] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-06-16 01:33:01,817] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-06-16 01:33:01,917] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-06-16 01:33:02,022] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-06-16 01:33:02,232] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-06-16 01:33:02,879] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-06-16 01:33:03,115] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-06-16 01:33:03,327] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-06-16 01:33:03,660] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-06-16 01:33:03,864] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-06-16 01:33:03,984] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-06-16 01:33:04,373] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-06-16 01:33:04,880] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-06-16 01:33:05,238] [pool-1-thread-2] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-06-16 01:33:05,689] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-06-16 01:33:08,400] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-06-16 01:33:08,572] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-06-16 01:33:09,348] [pool-1-thread-1] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-06-16 01:33:09,401] [pool-1-thread-5] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-06-16 01:33:09,625] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-06-16 01:33:09,971] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-06-16 01:33:10,461] [pool-1-thread-4] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-06-16 01:33:11,057] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-06-16 01:33:11,644] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-06-16 01:33:11,978] [pool-1-thread-3] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-06-16 01:33:12,069] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-06-16 01:33:13,427] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-06-16 01:33:17,800] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-06-16 01:33:18,394] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-06-16 01:33:18,643] [pool-1-thread-2] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-06-16 01:33:18,872] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-06-16 01:33:19,194] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-06-16 01:33:20,059] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-06-16 01:33:20,124] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-06-16 01:33:20,697] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-06-16 01:33:20,801] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-06-16 01:33:22,222] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-06-16 01:33:22,568] [pool-1-thread-2] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-06-16 01:33:22,736] [pool-1-thread-5] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-06-16 01:33:23,237] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-06-16 01:33:26,103] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-06-16 01:33:26,258] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-06-16 01:33:26,790] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-06-16 01:33:27,647] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-06-16 01:33:27,817] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-06-16 01:33:30,483] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-06-16 01:33:33,597] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-06-16 01:33:34,074] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-06-16 01:33:34,912] [pool-1-thread-2] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-06-16 01:33:35,523] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-06-16 01:33:36,640] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-06-16 01:33:36,863] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-06-16 01:33:38,651] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-06-16 01:33:39,191] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-06-16 01:33:40,458] [pool-1-thread-2] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-06-16 01:33:40,681] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-06-16 01:33:42,094] [pool-1-thread-2] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-06-16 01:33:42,912] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 50 minutes 21 seconds
Finished: SUCCESS