Started by upstream project "BIOFORMATS-test-repo" build number 94
originally caused by:
Started by upstream project "Trigger" build number 105
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3445079512145541415.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14420_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:22:29,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:22:29,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:22:29,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:29,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:22:29,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:22:29,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:22:29,810 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:22:29,810 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:29,811 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:22:29,811 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:22:29,812 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:22:29,812 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:22:30,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:22:30,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:22:30,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:22:30,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:22:30,053 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:22:30,053 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:22:30,053 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:22:30,054 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:22:30,054 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:22:30,055 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:22:30,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 244 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-16 01:22:30,067] [main] java.version = 17.0.2
[testng] 01:22:30,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:22:30,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:30,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-16_01-22-30.log]
[testng] 01:22:30,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-06-16 01:22:30,128] [main] testng.directory = /data
[testng] [2024-06-16 01:22:30,129] [main] testng.configDirectory = /config
[testng] [2024-06-16 01:22:30,142] [main] testng.multiplier = 1.0
[testng] [2024-06-16 01:22:30,143] [main] testng.in-memory = false
[testng] [2024-06-16 01:22:30,144] [main] testng.allow-missing = false
[testng] [2024-06-16 01:22:30,144] [main] user.language = en
[testng] [2024-06-16 01:22:30,144] [main] user.country = ${user.country}
[testng] [2024-06-16 01:22:30,144] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-16 01:22:30,524] [main] ----------------------------------------
[testng] [2024-06-16 01:22:30,524] [main] Total files: 21
[testng] [2024-06-16 01:22:30,524] [main] Scan time: 0.38 s (18 ms/file)
[testng] [2024-06-16 01:22:30,524] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-16 01:22:32,084] [pool-1-thread-1] Initializing /data/venu/Kontrolle0004.lim:
[testng] 01:22:32,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:22:32,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-16_01-22-32.log]
[testng] 01:22:32,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c579580 - End of configuration.
[testng] [2024-06-16 01:22:32,163] [pool-1-thread-12] Initializing /data/venu/Kontrolle0005.lim:
[testng] 01:22:32,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:22:32,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-16_01-22-32.log]
[testng] 01:22:32,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12eaf016 - End of configuration.
[testng] [2024-06-16 01:22:32,183] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim:
[testng] 01:22:32,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:22:32,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-16_01-22-32.log]
[testng] 01:22:32,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d7a6a10 - End of configuration.
[testng] [2024-06-16 01:22:32,208] [pool-1-thread-10] Initializing /data/venu/Kontrolle0019.lim:
[testng] 01:22:32,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:22:32,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-16_01-22-32.log]
[testng] 01:22:32,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c549eb - End of configuration.
[testng] [2024-06-16 01:22:32,234] [pool-1-thread-9] Initializing /data/venu/Kontrolle0012.lim:
[testng] 01:22:32,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:22:32,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-16_01-22-32.log]
[testng] 01:22:32,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bdf85b - End of configuration.
[testng] [2024-06-16 01:22:32,257] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim:
[testng] 01:22:32,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:22:32,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-16_01-22-32.log]
[testng] 01:22:32,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@536a70de - End of configuration.
[testng] [2024-06-16 01:22:32,285] [pool-1-thread-7] Initializing /data/venu/Kontrolle0002.lim:
[testng] 01:22:32,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:22:32,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-16_01-22-32.log]
[testng] 01:22:32,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28932618 - End of configuration.
[testng] [2024-06-16 01:22:32,302] [pool-1-thread-6] Initializing /data/venu/Kontrolle0021.lim:
[testng] 01:22:32,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:22:32,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-16_01-22-32.log]
[testng] 01:22:32,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1baff8f3 - End of configuration.
[testng] [2024-06-16 01:22:32,332] [pool-1-thread-5] Initializing /data/venu/Kontrolle0001.lim:
[testng] 01:22:32,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:22:32,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-16_01-22-32.log]
[testng] 01:22:32,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63bd9b57 - End of configuration.
[testng] [2024-06-16 01:22:32,352] [pool-1-thread-4] Initializing /data/venu/Kontrolle0020.lim:
[testng] 01:22:32,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:22:32,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-16_01-22-32.log]
[testng] 01:22:32,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b1497d - End of configuration.
[testng] [2024-06-16 01:22:32,366] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim:
[testng] 01:22:32,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:22:32,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-16_01-22-32.log]
[testng] 01:22:32,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27588e05 - End of configuration.
[testng] [2024-06-16 01:22:32,381] [pool-1-thread-2] Initializing /data/venu/Kontrolle0018.lim:
[testng] 01:22:32,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:22:32,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:22:32,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-16_01-22-32.log]
[testng] 01:22:32,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58b7993a - End of configuration.
[testng] [2024-06-16 01:22:34,595] [pool-1-thread-5] Initializing /data/venu/Kontrolle0007.lim:
[testng] [2024-06-16 01:22:34,615] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim:
[testng] [2024-06-16 01:22:34,638] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-06-16 01:22:34,665] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim:
[testng] [2024-06-16 01:22:34,691] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim:
[testng] [2024-06-16 01:22:34,712] [pool-1-thread-6] Initializing /data/venu/Kontrolle0016.lim:
[testng] [2024-06-16 01:22:34,741] [pool-1-thread-3] Initializing /data/venu/Kontrolle0015.lim:
[testng] [2024-06-16 01:22:34,764] [pool-1-thread-12] Initializing /data/venu/Kontrolle0017.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS