Started by upstream project "BIOFORMATS-test-repo" build number 94
originally caused by:
 Started by upstream project "Trigger" build number 105
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12014936561069699686.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14427_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:23:04,030 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:23:04,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:23:04,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:23:04,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:23:04,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:23:04,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:23:04,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:23:04,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:23:04,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:23:04,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:23:04,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:23:04,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:23:04,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:23:04,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:23:04,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:23:04,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:23:04,298 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:23:04,298 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:23:04,298 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:23:04,299 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:23:04,299 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:23:04,300 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:23:04,300 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-16 01:23:04,315] [main] java.version = 17.0.2
   [testng] 01:23:04,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:23:04,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:04,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-16_01-23-04.log]
   [testng] 01:23:04,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-06-16 01:23:04,390] [main] testng.directory = /data
   [testng] [2024-06-16 01:23:04,390] [main] testng.configDirectory = /config
   [testng] [2024-06-16 01:23:04,404] [main] testng.multiplier = 1.0
   [testng] [2024-06-16 01:23:04,405] [main] testng.in-memory = false
   [testng] [2024-06-16 01:23:04,405] [main] testng.allow-missing = false
   [testng] [2024-06-16 01:23:04,405] [main] user.language = en
   [testng] [2024-06-16 01:23:04,405] [main] user.country = ${user.country}
   [testng] [2024-06-16 01:23:04,405] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-06-16 01:23:04,784] [main] ----------------------------------------
   [testng] [2024-06-16 01:23:04,784] [main] Total files: 22
   [testng] [2024-06-16 01:23:04,784] [main] Scan time: 0.377 s (17 ms/file)
   [testng] [2024-06-16 01:23:04,784] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 22 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-16 01:23:46,842] [pool-1-thread-1] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: 
   [testng] 01:23:46,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:23:46,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:46,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-16_01-23-46.log]
   [testng] 01:23:46,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14603aba - End of configuration.
   [testng] [2024-06-16 01:23:52,114] [pool-1-thread-12] Initializing /data/imagej/fat-cells.zip: 
   [testng] 01:23:52,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:23:52,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:52,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-16_01-23-52.log]
   [testng] 01:23:52,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5382ff34 - End of configuration.
   [testng] [2024-06-16 01:23:54,515] [pool-1-thread-11] Initializing /data/imagej/FluorescentCells.zip: 
   [testng] 01:23:54,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:23:54,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:54,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-16_01-23-54.log]
   [testng] 01:23:54,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@324ed183 - End of configuration.
   [testng] [2024-06-16 01:23:54,889] [pool-1-thread-10] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: 
   [testng] 01:23:54,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:23:54,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:54,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-16_01-23-54.log]
   [testng] 01:23:54,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49b5e6bb - End of configuration.
   [testng] [2024-06-16 01:23:56,039] [pool-1-thread-9] Initializing /data/imagej/xrays.zip: 
   [testng] 01:23:56,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:23:56,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:56,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-16_01-23-56.log]
   [testng] 01:23:56,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fe45072 - End of configuration.
   [testng] [2024-06-16 01:23:56,137] [pool-1-thread-8] Initializing /data/imagej/confocal-series.zip: 
   [testng] 01:23:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:23:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:56,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-16_01-23-56.log]
   [testng] 01:23:56,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eecbcfa - End of configuration.
   [testng] [2024-06-16 01:23:59,555] [pool-1-thread-7] Initializing /data/imagej/watershed-animation.zip: 
   [testng] 01:23:59,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:23:59,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:59,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-16_01-23-59.log]
   [testng] 01:23:59,557 |-INFO in ch.qos.logback.core.sift.SiftProcessor@183b1266 - End of configuration.
   [testng] [2024-06-16 01:23:59,738] [pool-1-thread-6] Initializing /data/imagej/scala-media.zip: 
   [testng] 01:23:59,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:23:59,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:59,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-16_01-23-59.log]
   [testng] 01:23:59,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c1c7cae - End of configuration.
   [testng] [2024-06-16 01:23:59,859] [pool-1-thread-5] Initializing /data/imagej/m51.zip: 
   [testng] 01:23:59,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:23:59,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:59,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-16_01-23-59.log]
   [testng] 01:23:59,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58130b5f - End of configuration.
   [testng] [2024-06-16 01:23:59,978] [pool-1-thread-4] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: 
   [testng] 01:23:59,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:23:59,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:59,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-16_01-23-59.log]
   [testng] 01:23:59,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9530e7 - End of configuration.
   [testng] [2024-06-16 01:24:01,077] [pool-1-thread-3] Initializing /data/imagej/hela-cells.zip: 
   [testng] 01:24:01,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:24:01,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:01,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-16_01-24-01.log]
   [testng] 01:24:01,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f096d76 - End of configuration.
   [testng] [2024-06-16 01:24:01,867] [pool-1-thread-2] Initializing /data/samples/bat-cochlea-volume.zip: 
   [testng] 01:24:01,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:24:01,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:24:01,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-16_01-24-01.log]
   [testng] 01:24:01,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509f50f - End of configuration.
   [testng] [2024-06-16 01:24:05,010] [pool-1-thread-9] Initializing /data/imagej/RatBrain.zip: 
   [testng] [2024-06-16 01:24:05,203] [pool-1-thread-6] Initializing /data/imagej/flybrain.zip: 
   [testng] [2024-06-16 01:24:10,367] [pool-1-thread-5] Initializing /data/imagej/3D_Chromosome.zip: 
   [testng] [2024-06-16 01:24:12,269] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip: 
   [testng] [2024-06-16 01:24:12,986] [pool-1-thread-11] Initializing /data/imagej/gel-electrophoresis.zip: 
   [testng] [2024-06-16 01:24:16,000] [pool-1-thread-9] Initializing /data/imagej/se3.zip: 
   [testng] [2024-06-16 01:24:20,043] [pool-1-thread-7] Initializing /data/samples/sdub.zip: 
   [testng] [2024-06-16 01:24:23,989] [pool-1-thread-5] Initializing /data/imagej/blood-brain-barrier.zip: 
   [testng] [2024-06-16 01:24:30,802] [pool-1-thread-2] Initializing /data/imagej/mri-stack.zip: 
   [testng] [2024-06-16 01:24:31,701] [pool-1-thread-7] Initializing /data/imagej/confocal-stack.zip: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1166, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 5 minutes 42 seconds
Finished: SUCCESS