Started by upstream project "BIOFORMATS-test-repo" build number 94
originally caused by:
Started by upstream project "Trigger" build number 105
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10126634694964012968.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14456_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:30:37,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:30:37,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:30:37,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:30:37,548 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:30:37,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:30:37,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:30:37,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:30:37,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:30:37,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:30:37,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:30:37,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:30:37,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:30:37,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:30:37,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:30:37,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:30:37,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:30:37,775 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:30:37,775 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:30:37,776 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:30:37,777 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:30:37,777 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:30:37,778 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:30:37,778 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 228 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-16 01:30:37,790] [main] java.version = 17.0.2
[testng] 01:30:37,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:30:37,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:37,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-16_01-30-37.log]
[testng] 01:30:37,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-06-16 01:30:37,846] [main] testng.directory = /data
[testng] [2024-06-16 01:30:37,847] [main] testng.configDirectory = /config
[testng] [2024-06-16 01:30:37,857] [main] testng.multiplier = 1.0
[testng] [2024-06-16 01:30:37,858] [main] testng.in-memory = false
[testng] [2024-06-16 01:30:37,858] [main] testng.allow-missing = false
[testng] [2024-06-16 01:30:37,858] [main] user.language = en
[testng] [2024-06-16 01:30:37,858] [main] user.country = ${user.country}
[testng] [2024-06-16 01:30:37,858] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-16 01:30:38,255] [main] ----------------------------------------
[testng] [2024-06-16 01:30:38,255] [main] Total files: 25
[testng] [2024-06-16 01:30:38,255] [main] Scan time: 0.397 s (15 ms/file)
[testng] [2024-06-16 01:30:38,255] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-16 01:30:40,136] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 01:30:40,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:30:40,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-16_01-30-40.log]
[testng] 01:30:40,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6450a868 - End of configuration.
[testng] [2024-06-16 01:30:40,230] [pool-1-thread-12] Initializing /data/misc/planet.pict:
[testng] 01:30:40,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:30:40,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-16_01-30-40.log]
[testng] 01:30:40,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ab0d33 - End of configuration.
[testng] [2024-06-16 01:30:40,299] [pool-1-thread-11] Initializing /data/jqd/32bit.pict:
[testng] 01:30:40,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:30:40,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-16_01-30-40.log]
[testng] 01:30:40,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171003fe - End of configuration.
[testng] [2024-06-16 01:30:40,386] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT:
[testng] 01:30:40,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:30:40,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-16_01-30-40.log]
[testng] 01:30:40,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9ec837 - End of configuration.
[testng] [2024-06-16 01:30:40,426] [pool-1-thread-9] Initializing /data/misc/planet.png:
[testng] 01:30:40,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:30:40,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-16_01-30-40.log]
[testng] 01:30:40,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0ea8b8 - End of configuration.
[testng] [2024-06-16 01:30:40,438] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:30:40,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:30:40,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-16_01-30-40.log]
[testng] 01:30:40,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0ab901 - End of configuration.
[testng] [2024-06-16 01:30:40,460] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 01:30:40,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:30:40,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-16_01-30-40.log]
[testng] 01:30:40,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f51bdec - End of configuration.
[testng] [2024-06-16 01:30:40,504] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 01:30:40,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:30:40,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-16_01-30-40.log]
[testng] 01:30:40,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@253e58ee - End of configuration.
[testng] [2024-06-16 01:30:40,514] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] 01:30:40,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:30:40,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-16_01-30-40.log]
[testng] 01:30:40,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6131348 - End of configuration.
[testng] [2024-06-16 01:30:40,524] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 01:30:40,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:30:40,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-16_01-30-40.log]
[testng] 01:30:40,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dbc9680 - End of configuration.
[testng] [2024-06-16 01:30:40,752] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 01:30:40,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:30:40,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-16_01-30-40.log]
[testng] 01:30:40,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a511d88 - End of configuration.
[testng] [2024-06-16 01:30:40,778] [pool-1-thread-2] Initializing /data/misc/planet2.pict:
[testng] 01:30:40,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:30:40,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:40,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-16_01-30-40.log]
[testng] 01:30:40,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39dbc034 - End of configuration.
[testng] [2024-06-16 01:30:42,665] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict:
[testng] [2024-06-16 01:30:42,679] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct:
[testng] [2024-06-16 01:30:42,707] [pool-1-thread-3] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-06-16 01:30:42,729] [pool-1-thread-8] Initializing /data/brian/images/WHT.PCT:
[testng] [2024-06-16 01:30:42,752] [pool-1-thread-5] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-06-16 01:30:42,966] [pool-1-thread-9] Initializing /data/misc/swlogo.pict:
[testng] [2024-06-16 01:30:43,290] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] [2024-06-16 01:30:43,603] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-06-16 01:30:43,633] [pool-1-thread-11] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-06-16 01:30:43,817] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-06-16 01:30:43,834] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-06-16 01:30:44,101] [pool-1-thread-9] Initializing /data/brian/images/YEL.PCT:
[testng] [2024-06-16 01:30:44,122] [pool-1-thread-3] Initializing /data/jqd/mire32.pict:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS