Started by upstream project "BIOFORMATS-test-repo" build number 94 originally caused by: Started by upstream project "Trigger" build number 105 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3074425028779037469.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14490_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:56:37,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:56:37,359 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:56:37,359 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:37,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:37,361 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:56:37,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:56:37,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:56:37,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:37,363 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:37,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:56:37,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:56:37,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:56:37,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:56:37,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:56:37,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:56:37,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:56:37,575 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:56:37,575 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:56:37,575 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:56:37,576 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:56:37,576 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:56:37,577 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:56:37,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 214 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-16 01:56:37,587] [main] java.version = 17.0.2 [testng] 01:56:37,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:56:37,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:37,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-16_01-56-37.log] [testng] 01:56:37,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-06-16 01:56:37,643] [main] testng.directory = /data [testng] [2024-06-16 01:56:37,643] [main] testng.configDirectory = /config [testng] [2024-06-16 01:56:37,656] [main] testng.multiplier = 1.0 [testng] [2024-06-16 01:56:37,657] [main] testng.in-memory = false [testng] [2024-06-16 01:56:37,657] [main] testng.allow-missing = false [testng] [2024-06-16 01:56:37,657] [main] user.language = en [testng] [2024-06-16 01:56:37,657] [main] user.country = ${user.country} [testng] [2024-06-16 01:56:37,658] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-16 02:04:01,109] [main] ---------------------------------------- [testng] [2024-06-16 02:04:01,109] [main] Total files: 7329 [testng] [2024-06-16 02:04:01,110] [main] Scan time: 443.451 s (60 ms/file) [testng] [2024-06-16 02:04:01,110] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-16 02:06:48,773] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 02:06:48,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:06:48,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:48,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-16_02-06-48.log] [testng] 02:06:48,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cd6dd81 - End of configuration. [testng] [2024-06-16 02:06:48,835] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] 02:06:48,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:06:48,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:48,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-16_02-06-48.log] [testng] 02:06:48,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33fe01bc - End of configuration. [testng] [2024-06-16 02:06:49,152] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] 02:06:49,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:06:49,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-16_02-06-49.log] [testng] 02:06:49,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d1ead8 - End of configuration. [testng] [2024-06-16 02:06:49,223] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-16 02:06:49,225] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] 02:06:49,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:06:49,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-16_02-06-49.log] [testng] 02:06:49,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b9128c - End of configuration. [testng] [2024-06-16 02:06:49,273] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:06:49,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:06:49,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-16_02-06-49.log] [testng] 02:06:49,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c855115 - End of configuration. [testng] [2024-06-16 02:06:49,329] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 02:06:49,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:06:49,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-16_02-06-49.log] [testng] 02:06:49,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d4a06d0 - End of configuration. [testng] [2024-06-16 02:06:49,381] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 02:06:49,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:06:49,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-16_02-06-49.log] [testng] 02:06:49,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f7b1d3 - End of configuration. [testng] [2024-06-16 02:06:49,463] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-16 02:06:49,465] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 02:06:49,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:06:49,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-16_02-06-49.log] [testng] 02:06:49,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f3a36ee - End of configuration. [testng] [2024-06-16 02:06:49,519] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 02:06:49,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:06:49,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-16_02-06-49.log] [testng] 02:06:49,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f01fc62 - End of configuration. [testng] [2024-06-16 02:06:49,615] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 02:06:49,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:49,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-16_02-06-49.log] [testng] 02:06:49,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ff12c2e - End of configuration. [testng] [2024-06-16 02:06:49,646] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 02:06:49,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:06:49,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:49,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-16_02-06-49.log] [testng] 02:06:49,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@705ed2c6 - End of configuration. [testng] [2024-06-16 02:06:50,291] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 02:06:50,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:06:50,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:50,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-16_02-06-50.log] [testng] 02:06:50,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@789e7e26 - End of configuration. [testng] [2024-06-16 02:06:52,991] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-06-16 02:06:53,307] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-06-16 02:06:53,387] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-06-16 02:06:53,524] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-06-16 02:06:53,870] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-06-16 02:06:53,917] [pool-1-thread-6] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-06-16 02:06:54,104] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-16 02:06:54,264] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-06-16 02:06:54,707] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-06-16 02:06:54,869] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-06-16 02:06:54,962] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-16 02:06:54,979] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-16 02:06:55,094] [pool-1-thread-11] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-06-16 02:06:55,418] [pool-1-thread-4] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-06-16 02:06:55,821] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-06-16 02:06:56,644] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-06-16 02:06:57,118] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-06-16 02:06:57,699] [pool-1-thread-9] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-06-16 02:06:57,997] [pool-1-thread-3] Initializing /data/ascb/mt aim.tif: [testng] [2024-06-16 02:06:58,290] [pool-1-thread-11] Initializing /data/qa-16887/m-01.tif: [testng] [2024-06-16 02:06:58,764] [pool-1-thread-8] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-06-16 02:06:59,087] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-06-16 02:06:59,320] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-16 02:06:59,350] [pool-1-thread-4] Used files list does not include base file [testng] [2024-06-16 02:06:59,816] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-06-16 02:07:00,394] [pool-1-thread-4] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-06-16 02:07:01,670] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] [2024-06-16 02:07:02,442] [pool-1-thread-10] Initializing /data/samples/zserEight.stk: [testng] [2024-06-16 02:07:03,144] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-06-16 02:07:03,995] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-16 02:07:04,293] [pool-1-thread-1] Initializing /data/samples/zserSixteen.stk: [testng] [2024-06-16 02:07:04,493] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-16 02:07:04,545] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-06-16 02:07:04,594] [pool-1-thread-9] Initializing /data/ascb/golgi marker.tif: [testng] [2024-06-16 02:07:04,952] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-06-16 02:07:05,794] [pool-1-thread-11] Initializing /data/jae/RGB_s34.tif: [testng] [2024-06-16 02:07:05,867] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-16 02:07:06,350] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-06-16 02:07:06,411] [pool-1-thread-12] Initializing /data/josh/2101to400astk.stk: [testng] [2024-06-16 02:07:08,003] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-06-16 02:07:08,083] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-06-16 02:07:08,523] [pool-1-thread-1] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-06-16 02:07:09,012] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-06-16 02:07:10,092] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-06-16 02:07:10,163] [pool-1-thread-8] Used files list does not include base file [testng] [2024-06-16 02:07:10,165] [pool-1-thread-3] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-06-16 02:07:10,323] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-06-16 02:07:10,903] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-16 02:07:10,929] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-16 02:07:11,105] [pool-1-thread-5] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-06-16 02:07:11,163] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-06-16 02:07:11,218] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-06-16 02:07:11,565] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-06-16 02:07:11,707] [pool-1-thread-3] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-06-16 02:07:18,352] [pool-1-thread-5] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-06-16 02:07:18,474] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-06-16 02:07:18,546] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-16 02:07:18,607] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-06-16 02:07:18,912] [pool-1-thread-7] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-06-16 02:07:19,572] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-06-16 02:07:20,228] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-06-16 02:07:20,426] [pool-1-thread-8] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-06-16 02:07:20,635] [pool-1-thread-10] Initializing /data/qa-16915/m-01.tif: [testng] [2024-06-16 02:07:21,795] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-06-16 02:07:22,201] [pool-1-thread-11] Initializing /data/steve/Experiment2.stk: [testng] [2024-06-16 02:07:22,309] [pool-1-thread-8] Initializing /data/steve/Experiment2.tif: [testng] [2024-06-16 02:07:22,956] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-06-16 02:07:23,169] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-06-16 02:07:23,238] [pool-1-thread-9] Used files list does not include base file [testng] [2024-06-16 02:07:23,547] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-06-16 02:07:23,617] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-06-16 02:07:23,662] [pool-1-thread-11] Used files list does not include base file [testng] [2024-06-16 02:07:24,053] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-06-16 02:07:24,276] [pool-1-thread-7] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-06-16 02:07:24,532] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-06-16 02:07:26,397] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-06-16 02:07:26,410] [pool-1-thread-12] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-06-16 02:07:26,496] [pool-1-thread-8] Initializing 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Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-06-16 02:07:30,086] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-06-16 02:07:30,156] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-16 02:07:30,201] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-06-16 02:07:30,252] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-06-16 02:07:30,275] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-16 02:07:30,637] [pool-1-thread-8] Initializing /data/samples/zser24.stk: [testng] [2024-06-16 02:07:30,686] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-06-16 02:07:30,981] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-06-16 02:07:31,093] [pool-1-thread-12] Initializing /data/samples/diatoms3d.stk: [testng] [2024-06-16 02:07:31,193] [pool-1-thread-11] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-06-16 02:07:31,306] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-06-16 02:07:31,369] [pool-1-thread-9] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-06-16 02:07:32,229] [pool-1-thread-4] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-06-16 02:07:32,361] [pool-1-thread-12] Initializing /data/josh/2101to600f.stk: [testng] [2024-06-16 02:07:34,478] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-06-16 02:07:34,520] [pool-1-thread-8] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-06-16 02:07:34,607] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-06-16 02:07:34,654] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-16 02:07:34,754] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-06-16 02:07:34,943] [pool-1-thread-11] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-16 02:07:35,289] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-16 02:07:35,481] [pool-1-thread-2] Initializing /data/samples/10xcalib.tif: [testng] [2024-06-16 02:07:35,760] [pool-1-thread-5] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-06-16 02:07:35,894] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-06-16 02:07:36,287] [pool-1-thread-8] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-06-16 02:07:36,436] [pool-1-thread-9] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-06-16 02:07:36,736] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-06-16 02:07:36,970] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-06-16 02:07:37,088] [pool-1-thread-10] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-06-16 02:07:37,163] [pool-1-thread-2] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-06-16 02:07:37,220] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-16 02:07:37,472] [pool-1-thread-7] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-06-16 02:07:37,735] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-06-16 02:07:38,047] [pool-1-thread-9] Initializing /data/samples/zseries.stk: [testng] [2024-06-16 02:07:38,351] [pool-1-thread-11] Initializing 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/data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-06-16 02:07:47,934] [pool-1-thread-1] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-06-16 02:07:48,069] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-06-16 02:07:48,267] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-16 02:07:48,812] [pool-1-thread-2] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-06-16 02:07:49,305] [pool-1-thread-5] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-06-16 02:07:49,404] [pool-1-thread-11] Initializing /data/samples/10xcalib.stk: [testng] [2024-06-16 02:07:49,644] [pool-1-thread-2] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-06-16 02:07:49,742] [pool-1-thread-10] Initializing 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Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-06-16 02:07:52,742] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-06-16 02:07:52,882] [pool-1-thread-7] Initializing /data/dave/Z Series.stk: [testng] [2024-06-16 02:07:53,194] [pool-1-thread-10] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-06-16 02:07:53,441] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-06-16 02:07:53,507] [pool-1-thread-1] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-06-16 02:07:53,574] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-16 02:07:53,802] [pool-1-thread-2] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-06-16 02:07:54,278] [pool-1-thread-12] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-06-16 02:07:54,530] [pool-1-thread-7] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-06-16 02:07:54,647] [pool-1-thread-10] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-06-16 02:07:54,987] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-06-16 02:07:55,042] [pool-1-thread-2] Used files list does not include base file [testng] [2024-06-16 02:07:55,326] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-06-16 02:07:55,413] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-06-16 02:07:55,470] [pool-1-thread-12] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-06-16 02:07:56,003] [pool-1-thread-1] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-06-16 02:07:56,905] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-06-16 02:07:57,162] [pool-1-thread-12] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-06-16 02:07:57,706] [pool-1-thread-5] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-06-16 02:07:58,113] [pool-1-thread-1] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-06-16 02:07:58,261] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-06-16 02:07:58,384] [pool-1-thread-1] Initializing /data/josh/2101to600b.stk: [testng] [2024-06-16 02:07:59,657] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-06-16 02:08:00,269] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-06-16 02:08:00,375] [pool-1-thread-11] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-06-16 02:08:01,004] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-06-16 02:08:01,173] [pool-1-thread-12] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-06-16 02:08:01,292] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-06-16 02:08:02,051] [pool-1-thread-12] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-06-16 02:08:02,170] [pool-1-thread-8] Initializing /data/grant/X.STK: [testng] [2024-06-16 02:08:02,455] [pool-1-thread-10] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-06-16 02:08:02,688] [pool-1-thread-2] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-06-16 02:08:02,765] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-06-16 02:08:03,154] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-06-16 02:08:03,226] [pool-1-thread-7] Used files list does not include base file [testng] [2024-06-16 02:08:03,333] [pool-1-thread-5] Initializing /data/thomas/test.tif: [testng] [2024-06-16 02:08:03,447] [pool-1-thread-2] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-06-16 02:08:04,132] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-06-16 02:08:04,203] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-16 02:08:04,535] [pool-1-thread-10] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-06-16 02:08:04,707] [pool-1-thread-2] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-06-16 02:08:05,128] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-06-16 02:08:05,314] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-06-16 02:08:05,412] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-06-16 02:08:05,579] [pool-1-thread-6] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-06-16 02:08:07,446] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-06-16 02:08:07,467] [pool-1-thread-10] Used files list does not include base file [testng] [2024-06-16 02:08:07,595] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-06-16 02:08:07,655] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-06-16 02:08:08,003] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-06-16 02:08:08,083] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-06-16 02:08:08,129] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-06-16 02:08:08,171] [pool-1-thread-12] Used files list does not include base file [testng] [2024-06-16 02:08:08,302] [pool-1-thread-8] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-06-16 02:08:08,387] [pool-1-thread-2] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-06-16 02:08:08,811] [pool-1-thread-11] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-06-16 02:08:10,200] [pool-1-thread-1] Initializing /data/cumol-test-series/23.001: [testng] [2024-06-16 02:08:10,357] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-06-16 02:08:10,589] [pool-1-thread-7] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-06-16 02:08:10,676] [pool-1-thread-5] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-06-16 02:08:11,538] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-06-16 02:08:11,696] [pool-1-thread-10] Initializing /data/jerome/deconv.STK: [testng] [2024-06-16 02:08:12,149] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-06-16 02:08:14,519] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-06-16 02:08:14,581] [pool-1-thread-12] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-06-16 02:08:16,553] [pool-1-thread-2] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 47 seconds Finished: SUCCESS