Started by upstream project "BIOFORMATS-test-repo" build number 95 originally caused by: Started by upstream project "Trigger" build number 106 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins8943652957515860182.sh + '[' zip = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_14591_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:23:51,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:51,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:23:51,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:51,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:51,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:51,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:51,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:51,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:51,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:51,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:51,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:51,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:51,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:51,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:51,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:51,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:51,888 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:51,888 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:51,888 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:51,889 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:51,889 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:23:51,890 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:23:51,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 335 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-17 01:23:51,901] [main] java.version = 1.8.0_342 [testng] 01:23:51,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:51,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:51,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-17_01-23-51.log] [testng] 01:23:51,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-17 01:23:51,971] [main] testng.directory = /data [testng] [2024-06-17 01:23:51,972] [main] testng.configDirectory = /config [testng] [2024-06-17 01:23:51,988] [main] testng.multiplier = 1.0 [testng] [2024-06-17 01:23:51,989] [main] testng.in-memory = false [testng] [2024-06-17 01:23:51,989] [main] testng.allow-missing = false [testng] [2024-06-17 01:23:51,989] [main] user.language = fr [testng] [2024-06-17 01:23:51,989] [main] user.country = FR [testng] [2024-06-17 01:23:51,989] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-17 01:23:52,466] [main] ---------------------------------------- [testng] [2024-06-17 01:23:52,466] [main] Total files: 22 [testng] [2024-06-17 01:23:52,466] [main] Scan time: 0.477 s (21 ms/file) [testng] [2024-06-17 01:23:52,466] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-17 01:24:39,948] [pool-1-thread-1] Initializing /data/imagej/gel-electrophoresis.zip: [testng] 01:24:39,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:39,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:39,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-17_01-24-39.log] [testng] 01:24:39,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33ae3d1e - End of configuration. [testng] [2024-06-17 01:24:41,734] [pool-1-thread-12] Initializing /data/imagej/scala-media.zip: [testng] 01:24:41,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:41,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:41,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-17_01-24-41.log] [testng] 01:24:41,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c8a50fd - End of configuration. [testng] [2024-06-17 01:24:41,830] [pool-1-thread-11] Initializing /data/imagej/xrays.zip: [testng] 01:24:41,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:41,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:41,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-17_01-24-41.log] [testng] 01:24:41,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f968032 - End of configuration. [testng] [2024-06-17 01:24:41,911] [pool-1-thread-10] Initializing /data/imagej/RatBrain.zip: [testng] 01:24:41,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:41,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:41,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-17_01-24-41.log] [testng] 01:24:41,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c34ea9e - End of configuration. [testng] [2024-06-17 01:24:42,125] [pool-1-thread-9] Initializing /data/imagej/flybrain.zip: [testng] 01:24:42,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:42,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:42,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-17_01-24-42.log] [testng] 01:24:42,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55d14953 - End of configuration. [testng] [2024-06-17 01:24:47,341] [pool-1-thread-8] Initializing /data/samples/sdub.zip: [testng] 01:24:47,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:47,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:47,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-17_01-24-47.log] [testng] 01:24:47,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20641946 - End of configuration. [testng] [2024-06-17 01:24:47,841] [pool-1-thread-7] Initializing /data/imagej/fat-cells.zip: [testng] 01:24:47,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:47,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:47,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-17_01-24-47.log] [testng] 01:24:47,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff045b5 - End of configuration. [testng] [2024-06-17 01:24:50,342] [pool-1-thread-6] Initializing /data/imagej/FluorescentCells.zip: [testng] 01:24:50,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:50,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:50,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-17_01-24-50.log] [testng] 01:24:50,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a54ccd9 - End of configuration. [testng] [2024-06-17 01:24:50,518] [pool-1-thread-5] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] 01:24:50,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:50,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:50,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-17_01-24-50.log] [testng] 01:24:50,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ea463a - End of configuration. [testng] [2024-06-17 01:24:51,678] [pool-1-thread-4] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 01:24:51,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:51,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:51,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-17_01-24-51.log] [testng] 01:24:51,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dc9b08b - End of configuration. [testng] [2024-06-17 01:24:57,671] [pool-1-thread-3] Initializing /data/imagej/se3.zip: [testng] 01:24:57,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:57,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:57,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-17_01-24-57.log] [testng] 01:24:57,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10b99891 - End of configuration. [testng] [2024-06-17 01:25:01,495] [pool-1-thread-2] Initializing /data/imagej/mri-stack.zip: [testng] 01:25:01,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:01,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:01,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-17_01-25-01.log] [testng] 01:25:01,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b2eb1b4 - End of configuration. [testng] [2024-06-17 01:25:03,861] [pool-1-thread-11] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] [2024-06-17 01:25:05,119] [pool-1-thread-12] Initializing /data/imagej/blood-brain-barrier.zip: [testng] [2024-06-17 01:25:11,967] [pool-1-thread-10] Initializing /data/imagej/confocal-stack.zip: [testng] [2024-06-17 01:25:20,844] [pool-1-thread-6] Initializing /data/imagej/hela-cells.zip: [testng] [2024-06-17 01:25:22,567] [pool-1-thread-2] Initializing /data/imagej/watershed-animation.zip: [testng] [2024-06-17 01:25:24,696] [pool-1-thread-8] Initializing /data/imagej/3D_Chromosome.zip: [testng] [2024-06-17 01:25:25,269] [pool-1-thread-2] Initializing /data/imagej/m51.zip: [testng] [2024-06-17 01:25:27,268] [pool-1-thread-2] Initializing /data/imagej/confocal-series.zip: [testng] [2024-06-17 01:25:37,552] [pool-1-thread-8] Initializing /data/samples/bat-cochlea-volume.zip: [testng] [2024-06-17 01:25:49,961] [pool-1-thread-5] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 49 seconds Finished: SUCCESS