Started by upstream project "BIOFORMATS-test-repo" build number 95 originally caused by: Started by upstream project "Trigger" build number 106 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3096923106855884471.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_14596_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:26:09,100 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:26:09,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:26:09,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:09,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:26:09,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:26:09,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:26:09,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:26:09,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:09,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:26:09,104 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:26:09,104 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:26:09,104 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:26:09,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:26:09,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:26:09,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:26:09,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:26:09,436 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:26:09,436 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:26:09,436 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:26:09,437 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:26:09,437 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:26:09,438 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:26:09,438 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 335 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-17 01:26:09,449] [main] java.version = 1.8.0_342 [testng] 01:26:09,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:26:09,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:09,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-17_01-26-09.log] [testng] 01:26:09,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-17 01:26:09,516] [main] testng.directory = /data [testng] [2024-06-17 01:26:09,516] [main] testng.configDirectory = /config [testng] [2024-06-17 01:26:09,540] [main] testng.multiplier = 1.0 [testng] [2024-06-17 01:26:09,540] [main] testng.in-memory = false [testng] [2024-06-17 01:26:09,540] [main] testng.allow-missing = false [testng] [2024-06-17 01:26:09,541] [main] user.language = fr [testng] [2024-06-17 01:26:09,541] [main] user.country = FR [testng] [2024-06-17 01:26:09,541] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-17 01:26:23,970] [main] ---------------------------------------- [testng] [2024-06-17 01:26:23,970] [main] Total files: 226 [testng] [2024-06-17 01:26:23,970] [main] Scan time: 14.429 s (63 ms/file) [testng] [2024-06-17 01:26:23,970] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-17 01:26:32,535] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:26:32,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:26:32,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-17_01-26-32.log] [testng] 01:26:32,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308de7b7 - End of configuration. [testng] [2024-06-17 01:26:32,605] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 01:26:32,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:26:32,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-17_01-26-32.log] [testng] 01:26:32,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3453107a - End of configuration. [testng] [2024-06-17 01:26:32,616] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:26:32,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:26:32,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-17_01-26-32.log] [testng] 01:26:32,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ae3a04b - End of configuration. [testng] [2024-06-17 01:26:32,638] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 01:26:32,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:26:32,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-17_01-26-32.log] [testng] 01:26:32,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c8be0c - End of configuration. [testng] [2024-06-17 01:26:32,646] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:26:32,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:26:32,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-17_01-26-32.log] [testng] 01:26:32,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a5c17f6 - End of configuration. [testng] [2024-06-17 01:26:32,683] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:26:32,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:26:32,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-17_01-26-32.log] [testng] 01:26:32,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d6b8a40 - End of configuration. [testng] [2024-06-17 01:26:32,719] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:26:32,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:26:32,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-17_01-26-32.log] [testng] 01:26:32,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59253734 - End of configuration. [testng] [2024-06-17 01:26:32,756] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:26:32,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:26:32,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-17_01-26-32.log] [testng] 01:26:32,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b808c1 - End of configuration. [testng] [2024-06-17 01:26:32,770] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:26:32,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:26:32,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-17_01-26-32.log] [testng] 01:26:32,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ec5b491 - End of configuration. [testng] [2024-06-17 01:26:32,942] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 01:26:32,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:26:32,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-17_01-26-32.log] [testng] 01:26:32,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fb838b8 - End of configuration. [testng] [2024-06-17 01:26:32,952] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:26:32,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:26:32,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-17_01-26-32.log] [testng] 01:26:32,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@694a4b3e - End of configuration. [testng] [2024-06-17 01:26:32,960] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:26:32,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:26:32,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:32,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-17_01-26-32.log] [testng] 01:26:32,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d3bb45b - End of configuration. [testng] [2024-06-17 01:26:35,061] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-06-17 01:26:35,127] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-06-17 01:26:35,156] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-06-17 01:26:35,172] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-06-17 01:26:35,205] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-06-17 01:26:35,282] [pool-1-thread-12] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-06-17 01:26:35,289] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-06-17 01:26:35,309] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-06-17 01:26:35,338] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-06-17 01:26:35,358] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-06-17 01:26:35,731] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-06-17 01:26:35,795] [pool-1-thread-12] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-06-17 01:26:35,824] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-06-17 01:26:35,879] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-06-17 01:26:36,006] [pool-1-thread-9] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-06-17 01:26:36,089] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS