Started by upstream project "BIOFORMATS-test-repo" build number 95
originally caused by:
Started by upstream project "Trigger" build number 106
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17703484205623849462.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14636_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:46:08,157 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:46:08,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:46:08,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:46:08,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:46:08,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:46:08,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:46:08,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:46:08,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:46:08,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:46:08,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:46:08,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:46:08,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:46:08,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:46:08,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:46:08,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:46:08,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:46:08,435 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:46:08,435 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:46:08,435 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:46:08,435 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:46:08,436 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:46:08,436 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:46:08,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-17 01:46:08,447] [main] java.version = 1.8.0_342
[testng] 01:46:08,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:46:08,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:08,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-17_01-46-08.log]
[testng] 01:46:08,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-06-17 01:46:08,504] [main] testng.directory = /data
[testng] [2024-06-17 01:46:08,504] [main] testng.configDirectory = /config
[testng] [2024-06-17 01:46:08,517] [main] testng.multiplier = 1.0
[testng] [2024-06-17 01:46:08,517] [main] testng.in-memory = false
[testng] [2024-06-17 01:46:08,517] [main] testng.allow-missing = false
[testng] [2024-06-17 01:46:08,517] [main] user.language = fr
[testng] [2024-06-17 01:46:08,518] [main] user.country = FR
[testng] [2024-06-17 01:46:08,518] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-06-17 01:46:09,621] [main] ----------------------------------------
[testng] [2024-06-17 01:46:09,621] [main] Total files: 25
[testng] [2024-06-17 01:46:09,621] [main] Scan time: 1.103 s (44 ms/file)
[testng] [2024-06-17 01:46:09,621] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-17 01:46:10,662] [pool-1-thread-1] Initializing /data/imagic/1-1.dm2:
[testng] 01:46:10,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:46:10,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-17_01-46-10.log]
[testng] 01:46:10,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2880f18f - End of configuration.
[testng] [2024-06-17 01:46:10,699] [pool-1-thread-12] Initializing /data/pang/grating025k.dm2:
[testng] 01:46:10,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:46:10,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-17_01-46-10.log]
[testng] 01:46:10,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f8efc24 - End of configuration.
[testng] [2024-06-17 01:46:10,711] [pool-1-thread-11] Initializing /data/pang/unproc-auto:
[testng] 01:46:10,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:46:10,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-17_01-46-10.log]
[testng] 01:46:10,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f80843a - End of configuration.
[testng] [2024-06-17 01:46:10,727] [pool-1-thread-10] Initializing /data/pang/10500x-o4:
[testng] 01:46:10,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:46:10,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-17_01-46-10.log]
[testng] 01:46:10,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a0bb90 - End of configuration.
[testng] [2024-06-17 01:46:10,746] [pool-1-thread-9] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 01:46:10,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:46:10,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-17_01-46-10.log]
[testng] 01:46:10,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@480169f1 - End of configuration.
[testng] [2024-06-17 01:46:10,751] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng] 01:46:10,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:46:10,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-17_01-46-10.log]
[testng] 01:46:10,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8890f9f - End of configuration.
[testng] [2024-06-17 01:46:10,759] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] 01:46:10,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:46:10,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-17_01-46-10.log]
[testng] 01:46:10,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed47ee7 - End of configuration.
[testng] [2024-06-17 01:46:10,766] [pool-1-thread-6] Initializing /data/imagic/13008.dm2:
[testng] 01:46:10,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:46:10,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-17_01-46-10.log]
[testng] 01:46:10,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@186a598 - End of configuration.
[testng] [2024-06-17 01:46:10,784] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 01:46:10,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:46:10,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-17_01-46-10.log]
[testng] 01:46:10,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f6f909d - End of configuration.
[testng] [2024-06-17 01:46:10,789] [pool-1-thread-4] Initializing /data/pang/signed:
[testng] 01:46:10,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:46:10,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-17_01-46-10.log]
[testng] 01:46:10,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d511bcd - End of configuration.
[testng] [2024-06-17 01:46:10,802] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] 01:46:10,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:46:10,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-17_01-46-10.log]
[testng] 01:46:10,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f50e8f - End of configuration.
[testng] [2024-06-17 01:46:10,807] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] 01:46:10,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:46:10,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:10,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-17_01-46-10.log]
[testng] 01:46:10,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8ad204f - End of configuration.
[testng] [2024-06-17 01:46:12,153] [pool-1-thread-2] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] [2024-06-17 01:46:12,164] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] [2024-06-17 01:46:12,168] [pool-1-thread-5] Initializing /data/imagic/TEM 10118.dm2:
[testng] [2024-06-17 01:46:12,179] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] [2024-06-17 01:46:12,187] [pool-1-thread-12] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] [2024-06-17 01:46:12,190] [pool-1-thread-4] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 seconds
Finished: SUCCESS