Started by upstream project "BIOFORMATS-test-repo" build number 95
originally caused by:
Started by upstream project "Trigger" build number 106
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins9840759738849494880.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14718_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:45:43,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:45:43,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:45:43,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:45:43,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:45:43,676 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:45:43,676 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:45:43,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:45:43,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:45:43,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:45:43,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:45:43,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:45:43,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:45:43,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:45:43,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:45:44,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:45:44,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:45:44,028 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:45:44,028 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:45:44,028 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:45:44,028 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:45:44,029 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:45:44,029 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:45:44,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 352 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-17 02:45:44,040] [main] java.version = 1.8.0_342
[testng] 02:45:44,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:45:44,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:44,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-17_02-45-44.log]
[testng] 02:45:44,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-06-17 02:45:44,104] [main] testng.directory = /data
[testng] [2024-06-17 02:45:44,104] [main] testng.configDirectory = /config
[testng] [2024-06-17 02:45:44,117] [main] testng.multiplier = 1.0
[testng] [2024-06-17 02:45:44,118] [main] testng.in-memory = false
[testng] [2024-06-17 02:45:44,118] [main] testng.allow-missing = false
[testng] [2024-06-17 02:45:44,118] [main] user.language = fr
[testng] [2024-06-17 02:45:44,118] [main] user.country = FR
[testng] [2024-06-17 02:45:44,118] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-06-17 02:45:45,044] [main] ----------------------------------------
[testng] [2024-06-17 02:45:45,044] [main] Total files: 23
[testng] [2024-06-17 02:45:45,044] [main] Scan time: 0.926 s (40 ms/file)
[testng] [2024-06-17 02:45:45,044] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-17 02:45:49,882] [pool-1-thread-1] Initializing /data/public/NIH/filtered_func_data.nii.gz:
[testng] 02:45:49,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:45:49,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:49,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-17_02-45-49.log]
[testng] 02:45:49,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62392934 - End of configuration.
[testng] [2024-06-17 02:45:52,976] [pool-1-thread-12] Initializing /data/public/NIH/minimal.nii:
[testng] 02:45:52,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:45:52,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:52,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-17_02-45-52.log]
[testng] 02:45:52,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79f11383 - End of configuration.
[testng] [2024-06-17 02:45:52,988] [pool-1-thread-11] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr:
[testng] 02:45:52,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:45:52,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:52,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-17_02-45-52.log]
[testng] 02:45:52,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aa79e67 - End of configuration.
[testng] [2024-06-17 02:45:53,000] [pool-1-thread-10] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr:
[testng] 02:45:53,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:45:53,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-17_02-45-53.log]
[testng] 02:45:53,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ff62f7a - End of configuration.
[testng] [2024-06-17 02:45:53,013] [pool-1-thread-9] Initializing /data/qa-17334/volume4d.nii:
[testng] 02:45:53,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:45:53,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-17_02-45-53.log]
[testng] 02:45:53,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@700962c1 - End of configuration.
[testng] [2024-06-17 02:45:53,031] [pool-1-thread-8] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz:
[testng] 02:45:53,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:45:53,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-17_02-45-53.log]
[testng] 02:45:53,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eef6903 - End of configuration.
[testng] [2024-06-17 02:45:53,257] [pool-1-thread-7] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz:
[testng] 02:45:53,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:45:53,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-17_02-45-53.log]
[testng] 02:45:53,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486117b5 - End of configuration.
[testng] [2024-06-17 02:45:53,480] [pool-1-thread-6] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr:
[testng] 02:45:53,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:45:53,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-17_02-45-53.log]
[testng] 02:45:53,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce3049e - End of configuration.
[testng] [2024-06-17 02:45:53,499] [pool-1-thread-5] Initializing /data/public/NIH/filtered_func_data.nii:
[testng] 02:45:53,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:45:53,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-17_02-45-53.log]
[testng] 02:45:53,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@722016ab - End of configuration.
[testng] [2024-06-17 02:45:53,530] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_LR_nifti.nii:
[testng] 02:45:53,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:45:53,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-17_02-45-53.log]
[testng] 02:45:53,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f2b7732 - End of configuration.
[testng] [2024-06-17 02:45:53,560] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr:
[testng] 02:45:53,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:45:53,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-17_02-45-53.log]
[testng] 02:45:53,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fb335d1 - End of configuration.
[testng] [2024-06-17 02:45:53,572] [pool-1-thread-2] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr:
[testng] 02:45:53,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:45:53,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:45:53,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-17_02-45-53.log]
[testng] 02:45:53,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1585cf6f - End of configuration.
[testng] [2024-06-17 02:45:54,802] [pool-1-thread-12] Initializing /data/public/NIH/zstat1.nii:
[testng] [2024-06-17 02:45:54,814] [pool-1-thread-11] Initializing /data/public/NIH/newsirp_final_XML.nii:
[testng] [2024-06-17 02:45:54,834] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr:
[testng] [2024-06-17 02:45:54,844] [pool-1-thread-6] Initializing /data/public/NIH/zstat1.nii.gz:
[testng] [2024-06-17 02:45:54,913] [pool-1-thread-10] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr:
[testng] [2024-06-17 02:45:54,921] [pool-1-thread-2] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr:
[testng] [2024-06-17 02:45:54,933] [pool-1-thread-5] Initializing /data/public/NIH/minimal.hdr:
[testng] [2024-06-17 02:45:54,941] [pool-1-thread-9] Initializing /data/public/NIH/avg152T1_RL_nifti.nii:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 42 seconds
Finished: SUCCESS