Started by upstream project "BIOFORMATS-test-repo" build number 96
originally caused by:
Started by upstream project "Trigger" build number 107
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins18199075682301034787.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14800_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:43:40,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:43:40,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:43:40,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:43:40,174 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:43:40,174 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:43:40,175 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:43:40,175 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:43:40,175 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:43:40,176 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:43:40,176 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:43:40,176 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:43:40,177 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:43:40,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:43:40,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:43:40,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:43:40,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:43:40,374 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:43:40,375 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:43:40,375 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:43:40,375 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:43:40,375 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:43:40,376 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:43:40,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-18 01:43:40,385] [main] java.version = 11.0.16
[testng] 01:43:40,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:43:40,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:40,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-18_01-43-40.log]
[testng] 01:43:40,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-06-18 01:43:40,433] [main] testng.directory = /data
[testng] [2024-06-18 01:43:40,434] [main] testng.configDirectory = /config
[testng] [2024-06-18 01:43:40,444] [main] testng.multiplier = 1.0
[testng] [2024-06-18 01:43:40,445] [main] testng.in-memory = false
[testng] [2024-06-18 01:43:40,445] [main] testng.allow-missing = false
[testng] [2024-06-18 01:43:40,445] [main] user.language = en
[testng] [2024-06-18 01:43:40,445] [main] user.country = ${user.country}
[testng] [2024-06-18 01:43:40,445] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-18 01:43:41,270] [main] ----------------------------------------
[testng] [2024-06-18 01:43:41,270] [main] Total files: 25
[testng] [2024-06-18 01:43:41,270] [main] Scan time: 0.824 s (32 ms/file)
[testng] [2024-06-18 01:43:41,270] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-18 01:43:42,324] [pool-1-thread-1] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] 01:43:42,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:43:42,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-18_01-43-42.log]
[testng] 01:43:42,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c80c697 - End of configuration.
[testng] [2024-06-18 01:43:42,345] [pool-1-thread-12] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 01:43:42,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:43:42,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-18_01-43-42.log]
[testng] 01:43:42,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6370a348 - End of configuration.
[testng] [2024-06-18 01:43:42,354] [pool-1-thread-11] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] 01:43:42,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:43:42,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-18_01-43-42.log]
[testng] 01:43:42,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d938d13 - End of configuration.
[testng] [2024-06-18 01:43:42,374] [pool-1-thread-10] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 01:43:42,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:43:42,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-18_01-43-42.log]
[testng] 01:43:42,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a53f342 - End of configuration.
[testng] [2024-06-18 01:43:42,380] [pool-1-thread-9] Initializing /data/imagic/1-1.dm2:
[testng] 01:43:42,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:43:42,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-18_01-43-42.log]
[testng] 01:43:42,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39445f8a - End of configuration.
[testng] [2024-06-18 01:43:42,424] [pool-1-thread-8] Initializing /data/pang/signed:
[testng] 01:43:42,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:43:42,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-18_01-43-42.log]
[testng] 01:43:42,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c95f2e - End of configuration.
[testng] [2024-06-18 01:43:42,442] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] 01:43:42,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:43:42,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-18_01-43-42.log]
[testng] 01:43:42,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@391c921b - End of configuration.
[testng] [2024-06-18 01:43:42,448] [pool-1-thread-6] Initializing /data/pang/unproc-auto:
[testng] 01:43:42,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:43:42,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-18_01-43-42.log]
[testng] 01:43:42,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57616645 - End of configuration.
[testng] [2024-06-18 01:43:42,463] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng] 01:43:42,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:43:42,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-18_01-43-42.log]
[testng] 01:43:42,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae88e46 - End of configuration.
[testng] [2024-06-18 01:43:42,469] [pool-1-thread-4] Initializing /data/imagic/TEM 10118.dm2:
[testng] 01:43:42,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:43:42,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-18_01-43-42.log]
[testng] 01:43:42,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24de38e3 - End of configuration.
[testng] [2024-06-18 01:43:42,482] [pool-1-thread-3] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] 01:43:42,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:43:42,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-18_01-43-42.log]
[testng] 01:43:42,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4299f0c9 - End of configuration.
[testng] [2024-06-18 01:43:42,495] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] 01:43:42,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:43:42,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:42,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-18_01-43-42.log]
[testng] 01:43:42,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647a9aac - End of configuration.
[testng] [2024-06-18 01:43:44,088] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] [2024-06-18 01:43:44,097] [pool-1-thread-10] Initializing /data/pang/grating025k.dm2:
[testng] [2024-06-18 01:43:44,108] [pool-1-thread-7] Initializing /data/pang/10500x-o4:
[testng] [2024-06-18 01:43:44,123] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] [2024-06-18 01:43:44,126] [pool-1-thread-6] Initializing /data/imagic/13008.dm2:
[testng] [2024-06-18 01:43:44,141] [pool-1-thread-8] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 seconds
Finished: SUCCESS