Started by upstream project "BIOFORMATS-test-repo" build number 96
originally caused by:
Started by upstream project "Trigger" build number 107
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10248684556648343460.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14888_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:43:27,333 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:43:27,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:43:27,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:27,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:27,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:43:27,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:43:27,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:43:27,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:27,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:27,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:43:27,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:43:27,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:43:27,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:43:27,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:43:27,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:43:27,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:43:27,564 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:43:27,564 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:43:27,564 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:43:27,565 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:43:27,565 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:43:27,565 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:43:27,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 227 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-18 02:43:27,575] [main] java.version = 11.0.16
[testng] 02:43:27,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:43:27,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:27,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-18_02-43-27.log]
[testng] 02:43:27,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-06-18 02:43:27,627] [main] testng.directory = /data
[testng] [2024-06-18 02:43:27,627] [main] testng.configDirectory = /config
[testng] [2024-06-18 02:43:27,638] [main] testng.multiplier = 1.0
[testng] [2024-06-18 02:43:27,639] [main] testng.in-memory = false
[testng] [2024-06-18 02:43:27,639] [main] testng.allow-missing = false
[testng] [2024-06-18 02:43:27,639] [main] user.language = en
[testng] [2024-06-18 02:43:27,639] [main] user.country = ${user.country}
[testng] [2024-06-18 02:43:27,639] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-18 02:43:28,603] [main] ----------------------------------------
[testng] [2024-06-18 02:43:28,603] [main] Total files: 17
[testng] [2024-06-18 02:43:28,603] [main] Scan time: 0.963 s (56 ms/file)
[testng] [2024-06-18 02:43:28,604] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-18 02:43:29,739] [pool-1-thread-1] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 02:43:29,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:43:29,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-18_02-43-29.log]
[testng] 02:43:29,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65f53a7f - End of configuration.
[testng] [2024-06-18 02:43:29,780] [pool-1-thread-12] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] 02:43:29,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:43:29,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-18_02-43-29.log]
[testng] 02:43:29,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27442a3b - End of configuration.
[testng] [2024-06-18 02:43:29,811] [pool-1-thread-11] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] 02:43:29,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:43:29,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-18_02-43-29.log]
[testng] 02:43:29,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ce53db3 - End of configuration.
[testng] [2024-06-18 02:43:29,830] [pool-1-thread-10] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng] 02:43:29,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:43:29,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-18_02-43-29.log]
[testng] 02:43:29,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62214005 - End of configuration.
[testng] [2024-06-18 02:43:29,857] [pool-1-thread-9] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 02:43:29,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:43:29,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-18_02-43-29.log]
[testng] 02:43:29,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15d6e7a2 - End of configuration.
[testng] [2024-06-18 02:43:29,872] [pool-1-thread-8] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] 02:43:29,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:43:29,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-18_02-43-29.log]
[testng] 02:43:29,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63e09cf5 - End of configuration.
[testng] [2024-06-18 02:43:29,894] [pool-1-thread-7] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 02:43:29,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:43:29,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-18_02-43-29.log]
[testng] 02:43:29,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642dbb8a - End of configuration.
[testng] [2024-06-18 02:43:29,917] [pool-1-thread-6] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 02:43:29,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:43:29,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-18_02-43-29.log]
[testng] 02:43:29,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2658ef15 - End of configuration.
[testng] [2024-06-18 02:43:29,940] [pool-1-thread-5] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] 02:43:29,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:43:29,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-18_02-43-29.log]
[testng] 02:43:29,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7853b362 - End of configuration.
[testng] [2024-06-18 02:43:29,963] [pool-1-thread-4] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 02:43:29,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:43:29,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-18_02-43-29.log]
[testng] 02:43:29,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fd98929 - End of configuration.
[testng] [2024-06-18 02:43:29,978] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 02:43:29,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:43:29,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-18_02-43-29.log]
[testng] 02:43:29,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@667221c1 - End of configuration.
[testng] [2024-06-18 02:43:29,995] [pool-1-thread-2] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] 02:43:29,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:43:29,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:29,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-18_02-43-29.log]
[testng] 02:43:29,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31609622 - End of configuration.
[testng] [2024-06-18 02:43:31,541] [pool-1-thread-12] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] [2024-06-18 02:43:31,569] [pool-1-thread-3] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] [2024-06-18 02:43:31,599] [pool-1-thread-4] Initializing /data/samples/16bit 320x256x1.ipm:
[testng] [2024-06-18 02:43:31,605] [pool-1-thread-11] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] [2024-06-18 02:43:31,622] [pool-1-thread-9] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS