Started by upstream project "BIOFORMATS-test-repo" build number 2
originally caused by:
Started by upstream project "Trigger" build number 3
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15261162971492911037.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_150_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:20:53,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:20:53,309 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 00:20:53,309 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:20:53,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:20:53,310 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:20:53,310 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:20:53,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:20:53,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:20:53,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:20:53,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:20:53,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:20:53,312 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:20:53,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:20:53,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:20:53,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:20:53,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:20:53,592 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:20:53,592 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:20:53,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:20:53,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:20:53,593 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 00:20:53,593 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 00:20:53,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-15 00:20:53,605] [main] java.version = 1.8.0_342
[testng] 00:20:53,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:20:53,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:20:53,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_00-20-53.log]
[testng] 00:20:53,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-03-15 00:20:53,667] [main] testng.directory = /data
[testng] [2024-03-15 00:20:53,667] [main] testng.configDirectory = /config
[testng] [2024-03-15 00:20:53,683] [main] testng.multiplier = 1.0
[testng] [2024-03-15 00:20:53,683] [main] testng.in-memory = false
[testng] [2024-03-15 00:20:53,683] [main] testng.allow-missing = false
[testng] [2024-03-15 00:20:53,683] [main] user.language = en
[testng] [2024-03-15 00:20:53,683] [main] user.country = ${user.country}
[testng] [2024-03-15 00:20:53,683] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-03-15 00:21:02,311] [main] ----------------------------------------
[testng] [2024-03-15 00:21:02,312] [main] Total files: 21
[testng] [2024-03-15 00:21:02,312] [main] Scan time: 8.628 s (410 ms/file)
[testng] [2024-03-15 00:21:02,312] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-15 00:21:15,233] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt:
[testng] 00:21:15,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:21:15,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:15,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_00-21-15.log]
[testng] 00:21:15,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e7b5ba - End of configuration.
[testng] [2024-03-15 00:21:15,818] [pool-1-thread-12] Initializing /data/stefan/001_q09.txt:
[testng] 00:21:15,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:21:15,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:15,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_00-21-15.log]
[testng] 00:21:15,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ad9a9f9 - End of configuration.
[testng] [2024-03-15 00:21:16,654] [pool-1-thread-11] Initializing /data/stefan/001_q10.txt:
[testng] 00:21:16,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:21:16,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:16,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_00-21-16.log]
[testng] 00:21:16,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a9d3c9 - End of configuration.
[testng] [2024-03-15 00:21:17,423] [pool-1-thread-10] Initializing /data/stefan/001_q14.txt:
[testng] 00:21:17,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:21:17,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:17,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_00-21-17.log]
[testng] 00:21:17,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53c43d45 - End of configuration.
[testng] [2024-03-15 00:21:17,855] [pool-1-thread-9] Initializing /data/stefan/001_q11.txt:
[testng] 00:21:17,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:21:17,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:17,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_00-21-17.log]
[testng] 00:21:17,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66a85bc6 - End of configuration.
[testng] [2024-03-15 00:21:18,588] [pool-1-thread-8] Initializing /data/stefan/001_q01.txt:
[testng] 00:21:18,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:21:18,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:18,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_00-21-18.log]
[testng] 00:21:18,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@310c8a7a - End of configuration.
[testng] [2024-03-15 00:21:18,997] [pool-1-thread-7] Initializing /data/stefan/001_q03.txt:
[testng] 00:21:18,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:21:18,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:18,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_00-21-18.log]
[testng] 00:21:18,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24cb1aa3 - End of configuration.
[testng] [2024-03-15 00:21:19,410] [pool-1-thread-6] Initializing /data/stefan/001_q08.txt:
[testng] 00:21:19,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:21:19,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:19,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_00-21-19.log]
[testng] 00:21:19,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ffaad90 - End of configuration.
[testng] [2024-03-15 00:21:20,444] [pool-1-thread-5] Initializing /data/stefan/001_q04.txt:
[testng] 00:21:20,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:21:20,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:20,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_00-21-20.log]
[testng] 00:21:20,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62ed753d - End of configuration.
[testng] [2024-03-15 00:21:21,129] [pool-1-thread-4] Initializing /data/stefan/001_q13.txt:
[testng] 00:21:21,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:21:21,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:21,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_00-21-21.log]
[testng] 00:21:21,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f97dac4 - End of configuration.
[testng] [2024-03-15 00:21:21,942] [pool-1-thread-3] Initializing /data/stefan/001_q06.txt:
[testng] 00:21:21,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:21:21,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:21,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_00-21-21.log]
[testng] 00:21:21,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44d90f27 - End of configuration.
[testng] [2024-03-15 00:21:22,335] [pool-1-thread-2] Initializing /data/stefan/001_q02.txt:
[testng] 00:21:22,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:21:22,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:21:22,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_00-21-22.log]
[testng] 00:21:22,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4889f6ff - End of configuration.
[testng] [2024-03-15 00:21:31,048] [pool-1-thread-2] Initializing /data/stefan/001_q16.txt:
[testng] [2024-03-15 00:21:31,700] [pool-1-thread-7] Initializing /data/stefan/001_q17.txt:
[testng] [2024-03-15 00:21:32,437] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt:
[testng] [2024-03-15 00:21:33,452] [pool-1-thread-10] Initializing /data/stefan/001_q07.txt:
[testng] [2024-03-15 00:21:34,304] [pool-1-thread-1] Initializing /data/stefan/001_q05.txt:
[testng] [2024-03-15 00:21:34,736] [pool-1-thread-4] Initializing /data/stefan/001_q18.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 54 seconds
Finished: SUCCESS