Started by upstream project "BIOFORMATS-test-repo" build number 98
originally caused by:
Started by upstream project "Trigger" build number 109
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins5246091468806335661.sh
+ '[' cellr = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_15211_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:39:25,708 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:39:25,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 02:39:25,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:39:25,711 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:39:25,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:39:25,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:39:25,712 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:39:25,712 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:39:25,712 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:39:25,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:39:25,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:39:25,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:39:25,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:39:25,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:39:25,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:39:25,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:39:25,994 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:39:25,995 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:39:25,995 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:39:25,995 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:39:25,995 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 02:39:25,996 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 02:39:25,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 284 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-20 02:39:26,005] [main] java.version = 21
[testng] 02:39:26,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:39:26,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:39:26,048 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-20_02-39-26.log]
[testng] 02:39:26,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-06-20 02:39:26,050] [main] testng.directory = /data
[testng] [2024-06-20 02:39:26,051] [main] testng.configDirectory = /config
[testng] [2024-06-20 02:39:26,071] [main] testng.multiplier = 1.0
[testng] [2024-06-20 02:39:26,071] [main] testng.in-memory = false
[testng] [2024-06-20 02:39:26,071] [main] testng.allow-missing = false
[testng] [2024-06-20 02:39:26,071] [main] user.language = en
[testng] [2024-06-20 02:39:26,072] [main] user.country = ${user.country}
[testng] [2024-06-20 02:39:26,072] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-20 02:39:49,198] [main] ----------------------------------------
[testng] [2024-06-20 02:39:49,198] [main] Total files: 256
[testng] [2024-06-20 02:39:49,198] [main] Scan time: 23.126 s (90 ms/file)
[testng] [2024-06-20 02:39:49,199] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-20 02:40:21,476] [pool-1-thread-1] Initializing /data/clare/set_27_on_d.mtb:
[testng] 02:40:21,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:40:21,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:21,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-20_02-40-21.log]
[testng] 02:40:21,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@303593dc - End of configuration.
[testng] [2024-06-20 02:40:22,068] [pool-1-thread-12] Initializing /data/kees/Mariaelena_d.mtb:
[testng] 02:40:22,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:40:22,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-20_02-40-22.log]
[testng] 02:40:22,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25ee6e03 - End of configuration.
[testng] [2024-06-20 02:40:22,427] [pool-1-thread-11] Initializing /data/viktorie/Structure.jpg:
[testng] 02:40:22,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:40:22,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-20_02-40-22.log]
[testng] 02:40:22,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d2c4b9e - End of configuration.
[testng] [2024-06-20 02:40:22,455] [pool-1-thread-10] Initializing /data/viktorie/090902/090902_d.mtb:
[testng] 02:40:22,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:40:22,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-20_02-40-22.log]
[testng] 02:40:22,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485664a9 - End of configuration.
[testng] [2024-06-20 02:40:22,481] [pool-1-thread-9] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb:
[testng] 02:40:22,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:40:22,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:22,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-20_02-40-22.log]
[testng] 02:40:22,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e735d5 - End of configuration.
[testng] [2024-06-20 02:40:24,104] [pool-1-thread-8] Initializing /data/colin/08-10-09/08-10-09_d.mtb:
[testng] 02:40:24,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:40:24,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:24,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-20_02-40-24.log]
[testng] 02:40:24,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a8990c2 - End of configuration.
[testng] [2024-06-20 02:40:28,361] [pool-1-thread-7] Initializing /data/qa-17107/example2/example2_d.mtb:
[testng] 02:40:28,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:40:28,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:28,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-20_02-40-28.log]
[testng] 02:40:28,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e58650e - End of configuration.
[testng] [2024-06-20 02:40:28,400] [pool-1-thread-6] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb:
[testng] 02:40:28,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:40:28,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:28,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-20_02-40-28.log]
[testng] 02:40:28,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@197aed87 - End of configuration.
[testng] [2024-06-20 02:40:28,419] [pool-1-thread-5] Initializing /data/viktorie/2Channels.tif:
[testng] 02:40:28,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:40:28,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:28,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-20_02-40-28.log]
[testng] 02:40:28,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc1e753 - End of configuration.
[testng] [2024-06-20 02:40:28,473] [pool-1-thread-4] Initializing /data/qa-17107/plain/Plain_d.mtb:
[testng] 02:40:28,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:40:28,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:28,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-20_02-40-28.log]
[testng] 02:40:28,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c062be - End of configuration.
[testng] [2024-06-20 02:40:28,507] [pool-1-thread-3] Initializing /data/colin/07-06-21/07-06-21_d.mtb:
[testng] 02:40:28,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:40:28,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:28,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-20_02-40-28.log]
[testng] 02:40:28,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@512af8 - End of configuration.
[testng] [2024-06-20 02:40:28,653] [pool-1-thread-2] Initializing /data/viktorie/test/test_d.mtb:
[testng] 02:40:28,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:40:28,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:40:28,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-20_02-40-28.log]
[testng] 02:40:28,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f6cd01d - End of configuration.
[testng] [2024-06-20 02:40:30,442] [pool-1-thread-2] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 51 seconds
Finished: SUCCESS