Started by upstream project "BIOFORMATS-test-repo" build number 99
originally caused by:
 Started by upstream project "Trigger" build number 110
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins18278927254058808305.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_15368_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:39:36,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:39:36,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 02:39:36,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:39:36,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:39:36,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:39:36,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:39:36,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:39:36,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:39:36,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:39:36,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:39:36,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:39:36,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:39:37,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:39:37,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:39:37,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:39:37,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:39:37,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:39:37,156 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:39:37,156 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:39:37,156 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:39:37,156 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 02:39:37,157 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 02:39:37,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-21 02:39:37,167] [main] java.version = 1.8.0_342
   [testng] 02:39:37,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:39:37,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:37,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-21_02-39-37.log]
   [testng] 02:39:37,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-06-21 02:39:37,228] [main] testng.directory = /data
   [testng] [2024-06-21 02:39:37,229] [main] testng.configDirectory = /config
   [testng] [2024-06-21 02:39:37,246] [main] testng.multiplier = 1.0
   [testng] [2024-06-21 02:39:37,247] [main] testng.in-memory = false
   [testng] [2024-06-21 02:39:37,247] [main] testng.allow-missing = false
   [testng] [2024-06-21 02:39:37,247] [main] user.language = en
   [testng] [2024-06-21 02:39:37,247] [main] user.country = ${user.country}
   [testng] [2024-06-21 02:39:37,247] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-06-21 02:39:48,190] [main] ----------------------------------------
   [testng] [2024-06-21 02:39:48,190] [main] Total files: 944
   [testng] [2024-06-21 02:39:48,191] [main] Scan time: 10.943 s (11 ms/file)
   [testng] [2024-06-21 02:39:48,191] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-21 02:40:17,809] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 02:40:17,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:40:17,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:17,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-21_02-40-17.log]
   [testng] 02:40:17,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35da68f5 - End of configuration.
   [testng] [2024-06-21 02:40:17,878] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 02:40:17,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:40:17,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:17,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-21_02-40-17.log]
   [testng] 02:40:17,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4080f25e - End of configuration.
   [testng] [2024-06-21 02:40:17,932] [pool-1-thread-11] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 02:40:17,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:40:17,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:17,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-21_02-40-17.log]
   [testng] 02:40:17,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43bf8e8a - End of configuration.
   [testng] [2024-06-21 02:40:17,957] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif: 
   [testng] 02:40:17,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:40:17,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:17,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-21_02-40-17.log]
   [testng] 02:40:17,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@115ee0d3 - End of configuration.
   [testng] [2024-06-21 02:40:18,032] [pool-1-thread-9] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 02:40:18,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:40:18,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:18,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-21_02-40-18.log]
   [testng] 02:40:18,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a9049cd - End of configuration.
   [testng] [2024-06-21 02:40:18,094] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 02:40:18,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:40:18,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:18,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-21_02-40-18.log]
   [testng] 02:40:18,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bc928c3 - End of configuration.
   [testng] [2024-06-21 02:40:18,149] [pool-1-thread-7] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 02:40:18,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:40:18,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:18,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-21_02-40-18.log]
   [testng] 02:40:18,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@332d0e26 - End of configuration.
   [testng] [2024-06-21 02:40:18,188] [pool-1-thread-6] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 02:40:18,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:40:18,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:18,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-21_02-40-18.log]
   [testng] 02:40:18,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308a5984 - End of configuration.
   [testng] [2024-06-21 02:40:18,253] [pool-1-thread-5] Initializing /data/brian/Series002_z01.tif: 
   [testng] 02:40:18,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:40:18,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:18,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-21_02-40-18.log]
   [testng] 02:40:18,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a7eae1b - End of configuration.
   [testng] [2024-06-21 02:40:18,302] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 02:40:18,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:40:18,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:18,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-21_02-40-18.log]
   [testng] 02:40:18,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24abb174 - End of configuration.
   [testng] [2024-06-21 02:40:18,352] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 02:40:18,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:40:18,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:18,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-21_02-40-18.log]
   [testng] 02:40:18,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c4ba6e9 - End of configuration.
   [testng] [2024-06-21 02:40:18,432] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 02:40:18,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:40:18,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:18,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-21_02-40-18.log]
   [testng] 02:40:18,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1493db85 - End of configuration.
   [testng] [2024-06-21 02:40:20,347] [pool-1-thread-4] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] [2024-06-21 02:40:20,408] [pool-1-thread-12] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] [2024-06-21 02:40:25,428] [pool-1-thread-10] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 10 minutes 1 second
Finished: SUCCESS