Started by upstream project "BIOFORMATS-test-repo" build number 10
originally caused by:
 Started by upstream project "Trigger" build number 13
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins242049255855412403.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_1572_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:48:02,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:48:02,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:48:02,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:48:02,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:48:02,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:48:02,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:48:02,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:48:02,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:48:02,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:48:02,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:48:02,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:48:02,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:48:02,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:48:02,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:48:02,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:48:02,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:48:02,940 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:48:02,940 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:48:02,940 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:48:02,941 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:48:02,941 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:48:02,941 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:48:02,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-24 01:48:02,950] [main] java.version = 17.0.2
   [testng] 01:48:02,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:48:02,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:02,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-24_01-48-02.log]
   [testng] 01:48:02,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-03-24 01:48:02,995] [main] testng.directory = /data
   [testng] [2024-03-24 01:48:02,995] [main] testng.configDirectory = /config
   [testng] [2024-03-24 01:48:03,004] [main] testng.multiplier = 1.0
   [testng] [2024-03-24 01:48:03,005] [main] testng.in-memory = false
   [testng] [2024-03-24 01:48:03,005] [main] testng.allow-missing = false
   [testng] [2024-03-24 01:48:03,005] [main] user.language = en
   [testng] [2024-03-24 01:48:03,005] [main] user.country = ${user.country}
   [testng] [2024-03-24 01:48:03,005] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-03-24 01:52:34,625] [main] ----------------------------------------
   [testng] [2024-03-24 01:52:34,625] [main] Total files: 2169
   [testng] [2024-03-24 01:52:34,626] [main] Scan time: 271.62 s (125 ms/file)
   [testng] [2024-03-24 01:52:34,626] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-24 02:14:01,424] [pool-1-thread-1] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml: 
   [testng] 02:14:01,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:14:01,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:14:01,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-24_02-14-01.log]
   [testng] 02:14:01,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d84dfae - End of configuration.
   [testng] [2024-03-24 02:14:03,510] [pool-1-thread-12] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml: 
   [testng] 02:14:03,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:14:03,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:14:03,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-24_02-14-03.log]
   [testng] 02:14:03,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7099abd7 - End of configuration.
   [testng] [2024-03-24 02:16:17,310] [pool-1-thread-11] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml: 
   [testng] 02:16:17,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:16:17,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:17,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-24_02-16-17.log]
   [testng] 02:16:17,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65527e2b - End of configuration.
   [testng] [2024-03-24 02:16:24,328] [pool-1-thread-10] Initializing /data/ruben/20100827_004/experiment_descriptor.xml: 
   [testng] 02:16:24,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:16:24,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:24,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-24_02-16-24.log]
   [testng] 02:16:24,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d654a70 - End of configuration.
   [testng] [2024-03-24 02:16:39,684] [pool-1-thread-9] Initializing /data/juergen/Experiment/experiment_descriptor.xml: 
   [testng] 02:16:39,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:16:39,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:39,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-24_02-16-39.log]
   [testng] 02:16:39,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@401acfa7 - End of configuration.
   [testng] [2024-03-24 02:16:40,247] [pool-1-thread-8] Initializing /data/nadine/experiment_descriptor.xml: 
   [testng] 02:16:40,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:16:40,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:40,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-24_02-16-40.log]
   [testng] 02:16:40,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e952875 - End of configuration.
   [testng] [2024-03-24 02:16:40,851] [pool-1-thread-7] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml: 
   [testng] 02:16:40,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:16:40,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:16:40,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-24_02-16-40.log]
   [testng] 02:16:40,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5068b96f - End of configuration.
   [testng] [2024-03-24 02:18:49,963] [pool-1-thread-6] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml: 
   [testng] 02:18:49,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:18:49,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:18:49,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-24_02-18-49.log]
   [testng] 02:18:49,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15818a0 - End of configuration.
   [testng] [2024-03-24 02:19:53,137] [pool-1-thread-5] Initializing /data/gideon/experiment_descriptor.xml: 
   [testng] 02:19:53,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:19:53,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:19:53,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-24_02-19-53.log]
   [testng] 02:19:53,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56b7b3ce - End of configuration.
   [testng] [2024-03-24 02:20:24,178] [pool-1-thread-4] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml: 
   [testng] 02:20:24,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:20:24,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:20:24,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-24_02-20-24.log]
   [testng] 02:20:24,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f0da17 - End of configuration.
   [testng] [2024-03-24 02:20:49,906] [pool-1-thread-3] Initializing /data/christian/example/experiment_descriptor.xml: 
   [testng] 02:20:49,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:20:49,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:20:49,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-24_02-20-49.log]
   [testng] 02:20:49,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cb6e7eb - End of configuration.
   [testng] [2024-03-24 02:20:50,082] [pool-1-thread-2] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml: 
   [testng] 02:20:50,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:20:50,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:20:50,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-24_02-20-50.log]
   [testng] 02:20:50,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed926c1 - End of configuration.
   [testng] [2024-03-24 02:23:50,771] [pool-1-thread-3] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml: 
   [testng] [2024-03-24 02:24:08,695] [pool-1-thread-8] Initializing /data/embl/Maik_001/experiment_descriptor.xml: 
   [testng] [2024-03-24 02:24:16,787] [pool-1-thread-9] Initializing /data/ruben/plate_002/experiment_descriptor.xml: 
   [testng] [2024-03-24 02:25:33,597] [pool-1-thread-9] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml: 
   [testng] [2024-03-24 02:28:31,369] [pool-1-thread-1] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 64 minutes 12 seconds
Finished: SUCCESS