Started by upstream project "BIOFORMATS-test-repo" build number 102
originally caused by:
Started by upstream project "Trigger" build number 113
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins7048838665127415336.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_15812_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:12:25,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:12:25,513 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:12:25,513 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:12:25,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:12:25,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:12:25,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:12:25,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:12:25,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:12:25,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:12:25,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:12:25,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:12:25,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:12:25,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:12:25,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:12:25,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:12:25,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:12:25,839 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:12:25,839 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:12:25,839 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:12:25,839 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:12:25,839 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:12:25,840 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:12:25,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 324 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-24 02:12:25,850] [main] java.version = 1.8.0_342
[testng] 02:12:25,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:12:25,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:25,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-24_02-12-25.log]
[testng] 02:12:25,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-06-24 02:12:25,910] [main] testng.directory = /data
[testng] [2024-06-24 02:12:25,911] [main] testng.configDirectory = /config
[testng] [2024-06-24 02:12:25,928] [main] testng.multiplier = 1.0
[testng] [2024-06-24 02:12:25,928] [main] testng.in-memory = false
[testng] [2024-06-24 02:12:25,928] [main] testng.allow-missing = false
[testng] [2024-06-24 02:12:25,928] [main] user.language = fr
[testng] [2024-06-24 02:12:25,929] [main] user.country = FR
[testng] [2024-06-24 02:12:25,929] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-06-24 02:12:26,338] [main] ----------------------------------------
[testng] [2024-06-24 02:12:26,338] [main] Total files: 19
[testng] [2024-06-24 02:12:26,338] [main] Scan time: 0.409 s (21 ms/file)
[testng] [2024-06-24 02:12:26,338] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-24 02:12:27,955] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:12:27,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:12:27,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:27,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-24_02-12-27.log]
[testng] 02:12:27,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4581a028 - End of configuration.
[testng] [2024-06-24 02:12:27,990] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:12:27,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:12:27,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:27,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-24_02-12-27.log]
[testng] 02:12:27,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9039e0 - End of configuration.
[testng] [2024-06-24 02:12:28,123] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:12:28,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:12:28,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-24_02-12-28.log]
[testng] 02:12:28,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ca8914 - End of configuration.
[testng] [2024-06-24 02:12:28,156] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW:
[testng] 02:12:28,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:12:28,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-24_02-12-28.log]
[testng] 02:12:28,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647953af - End of configuration.
[testng] [2024-06-24 02:12:28,195] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 02:12:28,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:12:28,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-24_02-12-28.log]
[testng] 02:12:28,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d0cbf14 - End of configuration.
[testng] [2024-06-24 02:12:28,317] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW:
[testng] 02:12:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:12:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-24_02-12-28.log]
[testng] 02:12:28,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bb9dc74 - End of configuration.
[testng] [2024-06-24 02:12:28,338] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 02:12:28,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:12:28,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-24_02-12-28.log]
[testng] 02:12:28,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2abd69b - End of configuration.
[testng] [2024-06-24 02:12:28,362] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 02:12:28,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:12:28,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-24_02-12-28.log]
[testng] 02:12:28,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cfa8e5f - End of configuration.
[testng] [2024-06-24 02:12:28,387] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 02:12:28,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:12:28,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-24_02-12-28.log]
[testng] 02:12:28,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f3d9c0 - End of configuration.
[testng] [2024-06-24 02:12:28,409] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW:
[testng] 02:12:28,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:12:28,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-24_02-12-28.log]
[testng] 02:12:28,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@450a18d5 - End of configuration.
[testng] [2024-06-24 02:12:28,462] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] 02:12:28,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:12:28,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-24_02-12-28.log]
[testng] 02:12:28,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5bbb20 - End of configuration.
[testng] [2024-06-24 02:12:28,747] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:12:28,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:12:28,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:28,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-24_02-12-28.log]
[testng] 02:12:28,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@126fdf22 - End of configuration.
[testng] [2024-06-24 02:12:35,526] [pool-1-thread-12] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-06-24 02:12:35,540] [pool-1-thread-7] Initializing /data/samples/800R PICT0010.MRW:
[testng] [2024-06-24 02:12:35,555] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-06-24 02:12:35,571] [pool-1-thread-2] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2024-06-24 02:12:35,587] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-06-24 02:12:35,602] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] [2024-06-24 02:12:35,615] [pool-1-thread-10] Initializing /data/samples/3200R PICT0006.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 17 seconds
Finished: SUCCESS