Started by upstream project "BIOFORMATS-test-repo" build number 103
originally caused by:
Started by upstream project "Trigger" build number 114
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins10976772714821282319.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_15919_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:26:46,667 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:26:46,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:26:46,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:26:46,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:26:46,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:26:46,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:26:46,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:26:46,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:26:46,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:26:46,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:26:46,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:26:46,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:26:46,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:26:46,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:26:46,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:26:46,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:26:46,891 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:26:46,891 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:26:46,891 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:26:46,892 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:26:46,892 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:26:46,893 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:26:46,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 221 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-25 01:26:46,902] [main] java.version = 11.0.16
[testng] 01:26:46,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:26:46,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:46,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-25_01-26-46.log]
[testng] 01:26:46,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-06-25 01:26:46,954] [main] testng.directory = /data
[testng] [2024-06-25 01:26:46,954] [main] testng.configDirectory = /config
[testng] [2024-06-25 01:26:46,964] [main] testng.multiplier = 1.0
[testng] [2024-06-25 01:26:46,965] [main] testng.in-memory = false
[testng] [2024-06-25 01:26:46,965] [main] testng.allow-missing = false
[testng] [2024-06-25 01:26:46,966] [main] user.language = en
[testng] [2024-06-25 01:26:46,966] [main] user.country = ${user.country}
[testng] [2024-06-25 01:26:46,966] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-25 01:26:47,334] [main] ----------------------------------------
[testng] [2024-06-25 01:26:47,334] [main] Total files: 21
[testng] [2024-06-25 01:26:47,334] [main] Scan time: 0.368 s (17 ms/file)
[testng] [2024-06-25 01:26:47,335] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-25 01:26:48,369] [pool-1-thread-1] Initializing /data/samples/XING_B32.TGA:
[testng] 01:26:48,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:26:48,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-25_01-26-48.log]
[testng] 01:26:48,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d59a031 - End of configuration.
[testng] [2024-06-25 01:26:48,400] [pool-1-thread-12] Initializing /data/samples/FLAG_B32.TGA:
[testng] 01:26:48,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:26:48,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-25_01-26-48.log]
[testng] 01:26:48,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a93be46 - End of configuration.
[testng] [2024-06-25 01:26:48,447] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA:
[testng] 01:26:48,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:26:48,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-25_01-26-48.log]
[testng] 01:26:48,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@569de0da - End of configuration.
[testng] [2024-06-25 01:26:48,461] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA:
[testng] 01:26:48,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:26:48,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-25_01-26-48.log]
[testng] 01:26:48,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@479ad299 - End of configuration.
[testng] [2024-06-25 01:26:48,472] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA:
[testng] 01:26:48,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:26:48,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-25_01-26-48.log]
[testng] 01:26:48,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc0e59b - End of configuration.
[testng] [2024-06-25 01:26:48,483] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA:
[testng] 01:26:48,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:26:48,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-25_01-26-48.log]
[testng] 01:26:48,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1de93656 - End of configuration.
[testng] [2024-06-25 01:26:48,492] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA:
[testng] 01:26:48,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:26:48,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-25_01-26-48.log]
[testng] 01:26:48,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9db5c7 - End of configuration.
[testng] [2024-06-25 01:26:48,502] [pool-1-thread-6] Initializing /data/samples/UTC24.TGA:
[testng] 01:26:48,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:26:48,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-25_01-26-48.log]
[testng] 01:26:48,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51d2ce29 - End of configuration.
[testng] [2024-06-25 01:26:48,512] [pool-1-thread-5] Initializing /data/samples/MARBLES.TGA:
[testng] 01:26:48,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:26:48,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-25_01-26-48.log]
[testng] 01:26:48,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49086a99 - End of configuration.
[testng] [2024-06-25 01:26:48,532] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA:
[testng] 01:26:48,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:26:48,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-25_01-26-48.log]
[testng] 01:26:48,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@538f147d - End of configuration.
[testng] [2024-06-25 01:26:48,541] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA:
[testng] 01:26:48,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:26:48,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-25_01-26-48.log]
[testng] 01:26:48,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a651a84 - End of configuration.
[testng] [2024-06-25 01:26:48,552] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA:
[testng] 01:26:48,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:26:48,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:48,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-25_01-26-48.log]
[testng] 01:26:48,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67752198 - End of configuration.
[testng] [2024-06-25 01:26:50,193] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA:
[testng] [2024-06-25 01:26:50,202] [pool-1-thread-9] Initializing /data/samples/UBW8.TGA:
[testng] [2024-06-25 01:26:50,211] [pool-1-thread-8] Initializing /data/samples/XING_T24.TGA:
[testng] [2024-06-25 01:26:50,220] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-06-25 01:26:50,228] [pool-1-thread-12] Initializing /data/samples/UCM8.TGA:
[testng] [2024-06-25 01:26:50,234] [pool-1-thread-1] Initializing /data/samples/CTC24.TGA:
[testng] [2024-06-25 01:26:50,241] [pool-1-thread-3] Initializing /data/samples/CTC16.TGA:
[testng] [2024-06-25 01:26:50,248] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA:
[testng] [2024-06-25 01:26:50,257] [pool-1-thread-11] Initializing /data/samples/CCM8.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 seconds
Finished: SUCCESS