Started by upstream project "BIOFORMATS-test-repo" build number 104 originally caused by: Started by upstream project "Trigger" build number 116 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1486376315571278890.sh + '[' specs = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16072_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:24:42,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:24:42,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:24:42,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:24:42,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:24:42,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:24:42,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:24:42,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:24:42,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:24:42,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:24:42,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:24:42,827 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:24:42,827 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:24:43,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:24:43,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:24:43,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:24:43,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:24:43,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:24:43,063 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:24:43,063 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:24:43,064 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:24:43,064 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:24:43,064 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:24:43,065 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 240 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-27 01:24:43,076] [main] java.version = 21 [testng] 01:24:43,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:24:43,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:43,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-27_01-24-43.log] [testng] 01:24:43,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-27 01:24:43,141] [main] testng.directory = /data [testng] [2024-06-27 01:24:43,141] [main] testng.configDirectory = /config [testng] [2024-06-27 01:24:43,155] [main] testng.multiplier = 1.0 [testng] [2024-06-27 01:24:43,156] [main] testng.in-memory = false [testng] [2024-06-27 01:24:43,156] [main] testng.allow-missing = false [testng] [2024-06-27 01:24:43,156] [main] user.language = en [testng] [2024-06-27 01:24:43,156] [main] user.country = ${user.country} [testng] [2024-06-27 01:24:43,156] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-27 01:24:57,171] [main] ---------------------------------------- [testng] [2024-06-27 01:24:57,172] [main] Total files: 226 [testng] [2024-06-27 01:24:57,172] [main] Scan time: 14.015 s (62 ms/file) [testng] [2024-06-27 01:24:57,172] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-27 01:25:03,171] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL: [testng] 01:25:03,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:03,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-27_01-25-03.log] [testng] 01:25:03,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a48f2bb - End of configuration. [testng] [2024-06-27 01:25:03,192] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL: [testng] 01:25:03,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:03,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-27_01-25-03.log] [testng] 01:25:03,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bce9cdc - End of configuration. [testng] [2024-06-27 01:25:03,199] [pool-1-thread-11] Initializing /data/iplab/Blend_DIC.IPL: [testng] 01:25:03,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:03,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-27_01-25-03.log] [testng] 01:25:03,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@693e99e7 - End of configuration. [testng] [2024-06-27 01:25:03,212] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL: [testng] 01:25:03,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:03,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-27_01-25-03.log] [testng] 01:25:03,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47d28a68 - End of configuration. [testng] [2024-06-27 01:25:03,220] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] 01:25:03,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:03,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-27_01-25-03.log] [testng] 01:25:03,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18ad077c - End of configuration. [testng] [2024-06-27 01:25:03,342] [pool-1-thread-8] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 01:25:03,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:03,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-27_01-25-03.log] [testng] 01:25:03,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771d1763 - End of configuration. [testng] [2024-06-27 01:25:03,352] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 01:25:03,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:03,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-27_01-25-03.log] [testng] 01:25:03,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c43608 - End of configuration. [testng] [2024-06-27 01:25:03,379] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] 01:25:03,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:03,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-27_01-25-03.log] [testng] 01:25:03,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ddb6886 - End of configuration. [testng] [2024-06-27 01:25:03,397] [pool-1-thread-5] Initializing /data/fluoview/SpineAnimation.tif: [testng] 01:25:03,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:03,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-27_01-25-03.log] [testng] 01:25:03,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50e9e934 - End of configuration. [testng] [2024-06-27 01:25:03,431] [pool-1-thread-4] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:25:03,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:03,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-27_01-25-03.log] [testng] 01:25:03,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@538366a3 - End of configuration. [testng] [2024-06-27 01:25:03,441] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:25:03,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:03,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-27_01-25-03.log] [testng] 01:25:03,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1190531a - End of configuration. [testng] [2024-06-27 01:25:03,478] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 01:25:03,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:03,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:03,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-27_01-25-03.log] [testng] 01:25:03,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@674419ed - End of configuration. [testng] [2024-06-27 01:25:05,635] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2024-06-27 01:25:05,646] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-06-27 01:25:05,740] [pool-1-thread-3] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-06-27 01:25:05,751] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2024-06-27 01:25:05,791] [pool-1-thread-7] Initializing /data/iplab/16Bit XRay.IPL: [testng] [2024-06-27 01:25:05,797] [pool-1-thread-11] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2024-06-27 01:25:05,840] [pool-1-thread-8] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-06-27 01:25:05,875] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-06-27 01:25:05,889] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-06-27 01:25:05,897] [pool-1-thread-5] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2024-06-27 01:25:05,901] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-06-27 01:25:06,238] [pool-1-thread-5] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-06-27 01:25:06,248] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-06-27 01:25:06,255] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2024-06-27 01:25:06,427] [pool-1-thread-10] Initializing /data/fluoview/Sample_XT.tif: [testng] [2024-06-27 01:25:06,467] [pool-1-thread-4] Initializing /data/iplab/Color Histology.IPL: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS