Started by upstream project "BIOFORMATS-test-repo" build number 2
originally caused by:
Started by upstream project "Trigger" build number 3
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins10495564593318007214.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_161_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:25:35,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:25:35,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 00:25:35,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:35,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:35,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:25:35,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:25:35,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:25:35,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:35,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:35,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:25:35,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:25:35,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:25:35,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:25:35,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:25:35,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:25:35,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:25:35,967 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:25:35,967 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:25:35,967 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:25:35,967 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:25:35,967 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 00:25:35,968 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 00:25:35,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 296 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-15 00:25:35,980] [main] java.version = 1.8.0_342
[testng] 00:25:35,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:25:35,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:36,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_00-25-36.log]
[testng] 00:25:36,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-03-15 00:25:36,049] [main] testng.directory = /data
[testng] [2024-03-15 00:25:36,049] [main] testng.configDirectory = /config
[testng] [2024-03-15 00:25:36,065] [main] testng.multiplier = 1.0
[testng] [2024-03-15 00:25:36,066] [main] testng.in-memory = false
[testng] [2024-03-15 00:25:36,066] [main] testng.allow-missing = false
[testng] [2024-03-15 00:25:36,066] [main] user.language = en
[testng] [2024-03-15 00:25:36,066] [main] user.country = ${user.country}
[testng] [2024-03-15 00:25:36,066] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-03-15 00:26:38,937] [main] ----------------------------------------
[testng] [2024-03-15 00:26:38,937] [main] Total files: 226
[testng] [2024-03-15 00:26:38,938] [main] Scan time: 62.871 s (278 ms/file)
[testng] [2024-03-15 00:26:38,938] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-15 00:27:17,676] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 00:27:17,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:27:17,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:17,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_00-27-17.log]
[testng] 00:27:17,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bf7f190 - End of configuration.
[testng] [2024-03-15 00:27:17,879] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] 00:27:17,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:27:17,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:17,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_00-27-17.log]
[testng] 00:27:17,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5e1fe9 - End of configuration.
[testng] [2024-03-15 00:27:17,950] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 00:27:17,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:27:17,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:17,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_00-27-17.log]
[testng] 00:27:17,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f61140e - End of configuration.
[testng] [2024-03-15 00:27:17,992] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL:
[testng] 00:27:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:27:17,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:17,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_00-27-17.log]
[testng] 00:27:17,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ba1ba29 - End of configuration.
[testng] [2024-03-15 00:27:18,017] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] 00:27:18,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:27:18,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:18,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_00-27-18.log]
[testng] 00:27:18,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69f829b6 - End of configuration.
[testng] [2024-03-15 00:27:18,155] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif:
[testng] 00:27:18,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:27:18,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:18,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_00-27-18.log]
[testng] 00:27:18,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ea463a - End of configuration.
[testng] [2024-03-15 00:27:18,777] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 00:27:18,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:27:18,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:18,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_00-27-18.log]
[testng] 00:27:18,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f969ad - End of configuration.
[testng] [2024-03-15 00:27:18,978] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 00:27:18,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:27:18,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:18,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_00-27-18.log]
[testng] 00:27:18,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6231f040 - End of configuration.
[testng] [2024-03-15 00:27:19,001] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 00:27:19,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:27:19,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:19,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_00-27-19.log]
[testng] 00:27:19,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@efb147f - End of configuration.
[testng] [2024-03-15 00:27:19,129] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL:
[testng] 00:27:19,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:27:19,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:19,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_00-27-19.log]
[testng] 00:27:19,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f860088 - End of configuration.
[testng] [2024-03-15 00:27:19,151] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 00:27:19,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:27:19,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:19,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_00-27-19.log]
[testng] 00:27:19,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb278b6 - End of configuration.
[testng] [2024-03-15 00:27:19,166] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 00:27:19,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:27:19,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:19,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_00-27-19.log]
[testng] 00:27:19,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377882be - End of configuration.
[testng] [2024-03-15 00:27:20,831] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-03-15 00:27:21,000] [pool-1-thread-3] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-03-15 00:27:21,014] [pool-1-thread-10] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-03-15 00:27:21,024] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-03-15 00:27:21,039] [pool-1-thread-12] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-03-15 00:27:21,064] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-03-15 00:27:21,150] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-03-15 00:27:21,412] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-03-15 00:27:21,531] [pool-1-thread-1] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-03-15 00:27:21,569] [pool-1-thread-9] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-03-15 00:27:21,657] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-03-15 00:27:22,325] [pool-1-thread-3] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-03-15 00:27:22,349] [pool-1-thread-10] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-03-15 00:27:22,554] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-03-15 00:27:22,924] [pool-1-thread-6] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-03-15 00:27:22,952] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 55 seconds
Finished: SUCCESS