Started by upstream project "BIOFORMATS-test-repo" build number 105
originally caused by:
 Started by upstream project "Trigger" build number 117
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2227688867357005176.sh
+ '[' amira = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_16233_merge_ci -v /uod/idr/repos/curated/amira:/data -v /uod/idr-scratch/merge-ci/curated/amira:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:30:44,095 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:30:44,098 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 01:30:44,098 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:30:44,100 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:30:44,100 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:30:44,100 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:30:44,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:30:44,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:30:44,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:30:44,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:30:44,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:30:44,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:30:44,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:30:44,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:30:44,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:30:44,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:30:44,498 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:30:44,499 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:30:44,499 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:30:44,499 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:30:44,499 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 01:30:44,500 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 01:30:44,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 398 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-28 01:30:44,512] [main] java.version = 1.8.0_342
   [testng] 01:30:44,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:30:44,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:44,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-28_01-30-44.log]
   [testng] 01:30:44,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-06-28 01:30:44,588] [main] testng.directory = /data
   [testng] [2024-06-28 01:30:44,588] [main] testng.configDirectory = /config
   [testng] [2024-06-28 01:30:44,605] [main] testng.multiplier = 1.0
   [testng] [2024-06-28 01:30:44,605] [main] testng.in-memory = false
   [testng] [2024-06-28 01:30:44,605] [main] testng.allow-missing = false
   [testng] [2024-06-28 01:30:44,606] [main] user.language = en
   [testng] [2024-06-28 01:30:44,606] [main] user.country = ${user.country}
   [testng] [2024-06-28 01:30:44,606] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-06-28 01:30:45,398] [main] ----------------------------------------
   [testng] [2024-06-28 01:30:45,398] [main] Total files: 15
   [testng] [2024-06-28 01:30:45,398] [main] Scan time: 0.792 s (52 ms/file)
   [testng] [2024-06-28 01:30:45,398] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 12 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-28 01:30:47,771] [pool-1-thread-1] Initializing /data/samples/emptykey/test.am: 
   [testng] 01:30:47,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:30:47,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-28_01-30-47.log]
   [testng] 01:30:47,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@793c45dd - End of configuration.
   [testng] [2024-06-28 01:30:47,818] [pool-1-thread-12] Initializing /data/public/ignacio/test.am: 
   [testng] 01:30:47,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:30:47,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-28_01-30-47.log]
   [testng] 01:30:47,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11751b84 - End of configuration.
   [testng] [2024-06-28 01:30:47,856] [pool-1-thread-11] Initializing /data/jeremy/Virus_Membrane7-screenshot.PNG: 
   [testng] 01:30:47,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:30:47,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-28_01-30-47.log]
   [testng] 01:30:47,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60385c5d - End of configuration.
   [testng] [2024-06-28 01:30:47,865] [pool-1-thread-10] Initializing /data/public/imagesc-50585/BF_CheckMIB.am: 
   [testng] 01:30:47,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:30:47,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-28_01-30-47.log]
   [testng] 01:30:47,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17c2b96 - End of configuration.
   [testng] [2024-06-28 01:30:47,886] [pool-1-thread-9] Initializing /data/jcb/201108088/Haberman-Fig4A-original.am: 
   [testng] 01:30:47,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:30:47,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-28_01-30-47.log]
   [testng] 01:30:47,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a77d66a - End of configuration.
   [testng] [2024-06-28 01:30:47,919] [pool-1-thread-8] Initializing /data/johannes/template.labels: 
   [testng] 01:30:47,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:30:47,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-28_01-30-47.log]
   [testng] 01:30:47,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632154e8 - End of configuration.
   [testng] [2024-06-28 01:30:47,935] [pool-1-thread-7] Initializing /data/johannes/template.grey: 
   [testng] 01:30:47,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:30:47,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-28_01-30-47.log]
   [testng] 01:30:47,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4697f863 - End of configuration.
   [testng] [2024-06-28 01:30:47,981] [pool-1-thread-6] Initializing /data/public/imagesc-50585/BF_Check.tif: 
   [testng] 01:30:47,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:30:47,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-28_01-30-47.log]
   [testng] 01:30:47,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28f492b2 - End of configuration.
   [testng] [2024-06-28 01:30:48,007] [pool-1-thread-5] Initializing /data/jeremy/Virus_Membrane7.am: 
   [testng] 01:30:48,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:30:48,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:48,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-28_01-30-48.log]
   [testng] 01:30:48,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6095cfc6 - End of configuration.
   [testng] [2024-06-28 01:30:48,043] [pool-1-thread-4] Initializing /data/public/imagesc-50585/BF_CheckAmira.am: 
   [testng] 01:30:48,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:30:48,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:48,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-28_01-30-48.log]
   [testng] 01:30:48,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e10d976 - End of configuration.
   [testng] [2024-06-28 01:30:48,056] [pool-1-thread-3] Initializing /data/jeremy/Hiv_spikes.am: 
   [testng] 01:30:48,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:30:48,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:48,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-28_01-30-48.log]
   [testng] 01:30:48,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e7f93c - End of configuration.
   [testng] [2024-06-28 01:30:48,078] [pool-1-thread-2] Initializing /data/ilya/test.am: 
   [testng] 01:30:48,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:30:48,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:48,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-28_01-30-48.log]
   [testng] 01:30:48,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d23a6b0 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 636, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 15 seconds
Finished: SUCCESS