Started by upstream project "BIOFORMATS-test-repo" build number 106
originally caused by:
 Started by upstream project "Trigger" build number 118
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13447730975911125351.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_16389_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:22:59,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:22:59,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:22:59,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:22:59,467 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:22:59,468 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:22:59,468 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:22:59,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:22:59,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:22:59,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:22:59,470 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:22:59,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:22:59,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:22:59,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:22:59,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:22:59,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:22:59,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:22:59,737 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:22:59,737 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:22:59,738 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:22:59,739 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:22:59,739 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:22:59,741 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:22:59,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-29 01:22:59,759] [main] java.version = 11.0.16
   [testng] 01:22:59,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:22:59,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:22:59,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-29_01-22-59.log]
   [testng] 01:22:59,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-06-29 01:22:59,856] [main] testng.directory = /data
   [testng] [2024-06-29 01:22:59,856] [main] testng.configDirectory = /config
   [testng] [2024-06-29 01:22:59,874] [main] testng.multiplier = 1.0
   [testng] [2024-06-29 01:22:59,877] [main] testng.in-memory = false
   [testng] [2024-06-29 01:22:59,877] [main] testng.allow-missing = false
   [testng] [2024-06-29 01:22:59,877] [main] user.language = en
   [testng] [2024-06-29 01:22:59,877] [main] user.country = ${user.country}
   [testng] [2024-06-29 01:22:59,877] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-06-29 01:23:01,238] [main] ----------------------------------------
   [testng] [2024-06-29 01:23:01,239] [main] Total files: 21
   [testng] [2024-06-29 01:23:01,239] [main] Scan time: 1.36 s (64 ms/file)
   [testng] [2024-06-29 01:23:01,239] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-29 01:23:04,565] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: 
   [testng] 01:23:04,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:23:04,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:04,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-29_01-23-04.log]
   [testng] 01:23:04,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7af29f7b - End of configuration.
   [testng] [2024-06-29 01:23:04,659] [pool-1-thread-12] Initializing /data/stefan/001_q10.txt: 
   [testng] 01:23:04,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:23:04,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:04,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-29_01-23-04.log]
   [testng] 01:23:04,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7011ffda - End of configuration.
   [testng] [2024-06-29 01:23:04,881] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt: 
   [testng] 01:23:04,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:23:04,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:04,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-29_01-23-04.log]
   [testng] 01:23:04,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70bd121 - End of configuration.
   [testng] [2024-06-29 01:23:04,951] [pool-1-thread-10] Initializing /data/stefan/001_q16.txt: 
   [testng] 01:23:04,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:23:04,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:04,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-29_01-23-04.log]
   [testng] 01:23:04,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c277aef - End of configuration.
   [testng] [2024-06-29 01:23:05,061] [pool-1-thread-9] Initializing /data/stefan/001_q11.txt: 
   [testng] 01:23:05,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:23:05,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:05,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-29_01-23-05.log]
   [testng] 01:23:05,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6abdfb3 - End of configuration.
   [testng] [2024-06-29 01:23:05,264] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: 
   [testng] 01:23:05,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:23:05,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:05,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-29_01-23-05.log]
   [testng] 01:23:05,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fa042f3 - End of configuration.
   [testng] [2024-06-29 01:23:05,309] [pool-1-thread-7] Initializing /data/stefan/001_q04.txt: 
   [testng] 01:23:05,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:23:05,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:05,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-29_01-23-05.log]
   [testng] 01:23:05,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8f579b0 - End of configuration.
   [testng] [2024-06-29 01:23:05,355] [pool-1-thread-6] Initializing /data/stefan/001_q12.txt: 
   [testng] 01:23:05,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:23:05,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:05,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-29_01-23-05.log]
   [testng] 01:23:05,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@606aeb69 - End of configuration.
   [testng] [2024-06-29 01:23:05,512] [pool-1-thread-5] Initializing /data/stefan/001_q06.txt: 
   [testng] 01:23:05,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:23:05,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:05,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-29_01-23-05.log]
   [testng] 01:23:05,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34898a32 - End of configuration.
   [testng] [2024-06-29 01:23:05,579] [pool-1-thread-4] Initializing /data/stefan/001_q05.txt: 
   [testng] 01:23:05,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:23:05,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:05,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-29_01-23-05.log]
   [testng] 01:23:05,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14dd5f61 - End of configuration.
   [testng] [2024-06-29 01:23:05,623] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt: 
   [testng] 01:23:05,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:23:05,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:05,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-29_01-23-05.log]
   [testng] 01:23:05,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42c73c52 - End of configuration.
   [testng] [2024-06-29 01:23:05,668] [pool-1-thread-2] Initializing /data/stefan/001_q18.txt: 
   [testng] 01:23:05,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:23:05,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:23:05,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-29_01-23-05.log]
   [testng] 01:23:05,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2697f08b - End of configuration.
   [testng] [2024-06-29 01:23:09,490] [pool-1-thread-3] Initializing /data/stefan/001_q17.txt: 
   [testng] [2024-06-29 01:23:09,604] [pool-1-thread-8] Initializing /data/stefan/001_q01.txt: 
   [testng] [2024-06-29 01:23:09,646] [pool-1-thread-1] Initializing /data/stefan/001_q09.txt: 
   [testng] [2024-06-29 01:23:09,731] [pool-1-thread-10] Initializing /data/stefan/001_q13.txt: 
   [testng] [2024-06-29 01:23:09,789] [pool-1-thread-7] Initializing /data/stefan/001_q08.txt: 
   [testng] [2024-06-29 01:23:09,888] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 954, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 17 seconds
Finished: SUCCESS