Started by upstream project "BIOFORMATS-test-repo" build number 106
originally caused by:
Started by upstream project "Trigger" build number 118
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3163091691316171680.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_16400_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:25:29,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:25:29,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:25:29,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:29,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:25:29,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:25:29,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:25:29,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:25:29,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:29,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:25:29,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:25:29,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:25:29,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:25:29,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:25:29,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:25:29,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:25:29,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:25:29,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:25:29,326 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:25:29,327 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:25:29,327 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:25:29,328 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:25:29,329 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:25:29,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 249 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-06-29 01:25:29,346] [main] java.version = 11.0.16
[testng] 01:25:29,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:25:29,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:29,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-29_01-25-29.log]
[testng] 01:25:29,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-06-29 01:25:29,409] [main] testng.directory = /data
[testng] [2024-06-29 01:25:29,410] [main] testng.configDirectory = /config
[testng] [2024-06-29 01:25:29,424] [main] testng.multiplier = 1.0
[testng] [2024-06-29 01:25:29,426] [main] testng.in-memory = false
[testng] [2024-06-29 01:25:29,426] [main] testng.allow-missing = false
[testng] [2024-06-29 01:25:29,426] [main] user.language = en
[testng] [2024-06-29 01:25:29,426] [main] user.country = ${user.country}
[testng] [2024-06-29 01:25:29,426] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-06-29 01:25:41,518] [main] ----------------------------------------
[testng] [2024-06-29 01:25:41,519] [main] Total files: 226
[testng] [2024-06-29 01:25:41,519] [main] Scan time: 12.092 s (53 ms/file)
[testng] [2024-06-29 01:25:41,519] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-06-29 01:25:48,288] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 01:25:48,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:25:48,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-29_01-25-48.log]
[testng] 01:25:48,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1458088c - End of configuration.
[testng] [2024-06-29 01:25:48,366] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL:
[testng] 01:25:48,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:25:48,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-29_01-25-48.log]
[testng] 01:25:48,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c070f00 - End of configuration.
[testng] [2024-06-29 01:25:48,375] [pool-1-thread-11] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] 01:25:48,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:25:48,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-29_01-25-48.log]
[testng] 01:25:48,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3c5000 - End of configuration.
[testng] [2024-06-29 01:25:48,419] [pool-1-thread-10] Initializing /data/iplab/Chromosomes.IPL:
[testng] 01:25:48,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:25:48,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-29_01-25-48.log]
[testng] 01:25:48,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a6c22e5 - End of configuration.
[testng] [2024-06-29 01:25:48,429] [pool-1-thread-9] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 01:25:48,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:25:48,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-29_01-25-48.log]
[testng] 01:25:48,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e519c94 - End of configuration.
[testng] [2024-06-29 01:25:48,441] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 01:25:48,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:25:48,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-29_01-25-48.log]
[testng] 01:25:48,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262f9fe8 - End of configuration.
[testng] [2024-06-29 01:25:48,469] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 01:25:48,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:25:48,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-29_01-25-48.log]
[testng] 01:25:48,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15755609 - End of configuration.
[testng] [2024-06-29 01:25:48,550] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] 01:25:48,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:25:48,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-29_01-25-48.log]
[testng] 01:25:48,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bf40750 - End of configuration.
[testng] [2024-06-29 01:25:48,563] [pool-1-thread-5] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 01:25:48,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:25:48,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-29_01-25-48.log]
[testng] 01:25:48,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c7f86e4 - End of configuration.
[testng] [2024-06-29 01:25:48,573] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 01:25:48,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:25:48,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-29_01-25-48.log]
[testng] 01:25:48,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@307e1263 - End of configuration.
[testng] [2024-06-29 01:25:48,609] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 01:25:48,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:25:48,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-29_01-25-48.log]
[testng] 01:25:48,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78bee4bb - End of configuration.
[testng] [2024-06-29 01:25:48,643] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 01:25:48,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:25:48,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:48,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-29_01-25-48.log]
[testng] 01:25:48,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64830adf - End of configuration.
[testng] [2024-06-29 01:25:50,761] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-06-29 01:25:50,803] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-06-29 01:25:50,813] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-06-29 01:25:50,892] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-06-29 01:25:50,910] [pool-1-thread-2] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-06-29 01:25:50,915] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-06-29 01:25:50,930] [pool-1-thread-1] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-06-29 01:25:50,939] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-06-29 01:25:51,013] [pool-1-thread-5] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2024-06-29 01:25:51,018] [pool-1-thread-4] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-06-29 01:25:51,164] [pool-1-thread-11] Initializing /data/iplab/Actin.IPL:
[testng] [2024-06-29 01:25:51,301] [pool-1-thread-8] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-06-29 01:25:51,313] [pool-1-thread-5] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-06-29 01:25:51,383] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-06-29 01:25:51,509] [pool-1-thread-12] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-06-29 01:25:51,638] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 28 seconds
Finished: SUCCESS