Started by upstream project "BIOFORMATS-test-repo" build number 11 originally caused by: Started by upstream project "Trigger" build number 14 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1547216024133358851.sh + '[' perkinelmer-densitometer = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_1678_merge_ci -v /uod/idr/repos/curated/perkinelmer-densitometer:/data -v /uod/idr-scratch/merge-ci/curated/perkinelmer-densitometer:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:59:36,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:59:36,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:59:36,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:59:36,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:59:36,237 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:59:36,237 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:59:36,237 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:59:36,238 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:59:36,238 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 00:59:36,239 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 00:59:36,239 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 500 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-25 00:59:36,251] [main] java.version = 1.8.0_342 [testng] 00:59:36,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:59:36,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:36,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-25_00-59-36.log] [testng] 00:59:36,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-25 00:59:36,315] [main] testng.directory = /data [testng] [2024-03-25 00:59:36,315] [main] testng.configDirectory = /config [testng] [2024-03-25 00:59:36,330] [main] testng.multiplier = 1.0 [testng] [2024-03-25 00:59:36,331] [main] testng.in-memory = false [testng] [2024-03-25 00:59:36,331] [main] testng.allow-missing = false [testng] [2024-03-25 00:59:36,331] [main] user.language = fr [testng] [2024-03-25 00:59:36,331] [main] user.country = FR [testng] [2024-03-25 00:59:36,331] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-25 00:59:38,947] [main] ---------------------------------------- [testng] [2024-03-25 00:59:38,947] [main] Total files: 19 [testng] [2024-03-25 00:59:38,947] [main] Scan time: 2.616 s (137 ms/file) [testng] [2024-03-25 00:59:38,947] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-25 00:59:41,271] [pool-1-thread-2] Initializing /data/ascb/DP1190.tif: [testng] 00:59:41,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:59:41,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-25_00-59-41.log] [testng] 00:59:41,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33f13d52 - End of configuration. [testng] [2024-03-25 00:59:41,420] [pool-1-thread-11] Initializing /data/ascb/U8092001.tif: [testng] 00:59:41,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:59:41,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-25_00-59-41.log] [testng] 00:59:41,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6212b984 - End of configuration. [testng] [2024-03-25 00:59:41,519] [pool-1-thread-10] Initializing /data/ascb/3/PT118001.hdr: [testng] 00:59:41,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:59:41,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-25_00-59-41.log] [testng] 00:59:41,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a86aef4 - End of configuration. [testng] [2024-03-25 00:59:41,575] [pool-1-thread-9] Initializing /data/ascb/DP1190.hdr: [testng] 00:59:41,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:59:41,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-25_00-59-41.log] [testng] 00:59:41,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f893340 - End of configuration. [testng] [2024-03-25 00:59:41,635] [pool-1-thread-8] Initializing /data/ascb/U8092001.hdr: [testng] 00:59:41,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:59:41,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-25_00-59-41.log] [testng] 00:59:41,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fd5da06 - End of configuration. [testng] [2024-03-25 00:59:41,700] [pool-1-thread-7] Initializing /data/ascb/PT1173A001.hdr: [testng] 00:59:41,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:59:41,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-25_00-59-41.log] [testng] 00:59:41,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353f7d86 - End of configuration. [testng] [2024-03-25 00:59:41,736] [pool-1-thread-6] Initializing /data/ascb/2/V8701001.hdr: [testng] 00:59:41,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:59:41,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-25_00-59-41.log] [testng] 00:59:41,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@654b34d4 - End of configuration. [testng] [2024-03-25 00:59:41,792] [pool-1-thread-5] Initializing /data/ascb/1/T8710001.hdr: [testng] 00:59:41,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:59:41,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-25_00-59-41.log] [testng] 00:59:41,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a9ba50d - End of configuration. [testng] [2024-03-25 00:59:41,817] [pool-1-thread-4] Initializing /data/ascb/Y7616001.tif: [testng] 00:59:41,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:59:41,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-25_00-59-41.log] [testng] 00:59:41,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632945a2 - End of configuration. [testng] [2024-03-25 00:59:41,987] [pool-1-thread-3] Initializing /data/ascb/PT1173A001.tif: [testng] 00:59:41,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:59:41,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:41,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-25_00-59-41.log] [testng] 00:59:41,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@95205c2 - End of configuration. [testng] [2024-03-25 00:59:42,123] [pool-1-thread-1] Initializing /data/ascb/Y7616001.hdr: [testng] 00:59:42,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:59:42,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:42,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-25_00-59-42.log] [testng] 00:59:42,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4799c899 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS