Started by upstream project "BIOFORMATS-test-repo" build number 108
originally caused by:
Started by upstream project "Trigger" build number 120
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins779709577755856804.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_16796_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:25:16,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:25:16,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:25:16,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:25:16,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:25:16,561 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:25:16,564 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:25:16,565 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:25:16,569 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:25:16,570 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 03:25:16,576 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 03:25:16,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 1001 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-01 03:25:16,622] [main] java.version = 1.8.0_342
[testng] 03:25:16,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:25:16,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:16,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-01_03-25-16.log]
[testng] 03:25:16,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-01 03:25:16,762] [main] testng.directory = /data
[testng] [2024-07-01 03:25:16,763] [main] testng.configDirectory = /config
[testng] [2024-07-01 03:25:16,805] [main] testng.multiplier = 1.0
[testng] [2024-07-01 03:25:16,806] [main] testng.in-memory = false
[testng] [2024-07-01 03:25:16,806] [main] testng.allow-missing = false
[testng] [2024-07-01 03:25:16,807] [main] user.language = fr
[testng] [2024-07-01 03:25:16,807] [main] user.country = FR
[testng] [2024-07-01 03:25:16,807] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-01 03:25:18,390] [main] ----------------------------------------
[testng] [2024-07-01 03:25:18,390] [main] Total files: 19
[testng] [2024-07-01 03:25:18,391] [main] Scan time: 1.583 s (83 ms/file)
[testng] [2024-07-01 03:25:18,391] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-01 03:25:21,716] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 03:25:21,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:25:21,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:21,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-01_03-25-21.log]
[testng] 03:25:21,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f561111 - End of configuration.
[testng] [2024-07-01 03:25:21,836] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 03:25:21,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:25:21,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:21,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-01_03-25-21.log]
[testng] 03:25:21,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46dd3e2e - End of configuration.
[testng] [2024-07-01 03:25:22,078] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 03:25:22,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:25:22,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:22,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-01_03-25-22.log]
[testng] 03:25:22,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30366930 - End of configuration.
[testng] [2024-07-01 03:25:22,159] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW:
[testng] 03:25:22,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:25:22,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:22,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-01_03-25-22.log]
[testng] 03:25:22,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e56cd36 - End of configuration.
[testng] [2024-07-01 03:25:22,210] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 03:25:22,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:25:22,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:22,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-01_03-25-22.log]
[testng] 03:25:22,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76930c7a - End of configuration.
[testng] [2024-07-01 03:25:22,350] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW:
[testng] 03:25:22,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:25:22,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:22,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-01_03-25-22.log]
[testng] 03:25:22,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@178b8206 - End of configuration.
[testng] [2024-07-01 03:25:22,655] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 03:25:22,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:25:22,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:22,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-01_03-25-22.log]
[testng] 03:25:22,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b09c124 - End of configuration.
[testng] [2024-07-01 03:25:22,743] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 03:25:22,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:25:22,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:22,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-01_03-25-22.log]
[testng] 03:25:22,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771160ed - End of configuration.
[testng] [2024-07-01 03:25:22,782] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 03:25:22,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:25:22,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:22,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-01_03-25-22.log]
[testng] 03:25:22,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8294b9 - End of configuration.
[testng] [2024-07-01 03:25:22,860] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW:
[testng] 03:25:22,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:25:22,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:22,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-01_03-25-22.log]
[testng] 03:25:22,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d81c61c - End of configuration.
[testng] [2024-07-01 03:25:23,691] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] 03:25:23,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:25:23,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:23,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-01_03-25-23.log]
[testng] 03:25:23,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15903fda - End of configuration.
[testng] [2024-07-01 03:25:23,835] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 03:25:23,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:25:23,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:25:23,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-01_03-25-23.log]
[testng] 03:25:23,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b19f54c - End of configuration.
[testng] [2024-07-01 03:25:39,855] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-07-01 03:25:39,898] [pool-1-thread-2] Initializing /data/samples/800R PICT0010.MRW:
[testng] [2024-07-01 03:25:39,963] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-07-01 03:25:40,023] [pool-1-thread-8] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2024-07-01 03:25:40,063] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-07-01 03:25:40,128] [pool-1-thread-3] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] [2024-07-01 03:25:40,186] [pool-1-thread-11] Initializing /data/samples/3200R PICT0006.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 40 seconds
Finished: SUCCESS