Started by upstream project "BIOFORMATS-test-repo" build number 109 originally caused by: Started by upstream project "Trigger" build number 122 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10220829850282081263.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16868_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 12:10:19,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:10:19,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 12:10:19,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:10:19,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:10:19,368 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:10:19,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:10:19,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:10:19,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:10:19,369 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:10:19,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:10:19,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:10:19,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:10:19,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:10:19,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:10:19,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:10:19,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:10:19,555 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:10:19,555 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:10:19,555 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:10:19,555 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:10:19,556 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 12:10:19,556 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 12:10:19,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-02 12:10:19,565] [main] java.version = 11.0.16 [testng] 12:10:19,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:10:19,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:19,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-02_12-10-19.log] [testng] 12:10:19,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-02 12:10:19,611] [main] testng.directory = /data [testng] [2024-07-02 12:10:19,611] [main] testng.configDirectory = /config [testng] [2024-07-02 12:10:19,620] [main] testng.multiplier = 1.0 [testng] [2024-07-02 12:10:19,621] [main] testng.in-memory = false [testng] [2024-07-02 12:10:19,621] [main] testng.allow-missing = false [testng] [2024-07-02 12:10:19,621] [main] user.language = en [testng] [2024-07-02 12:10:19,621] [main] user.country = ${user.country} [testng] [2024-07-02 12:10:19,621] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-02 12:10:20,583] [main] ---------------------------------------- [testng] [2024-07-02 12:10:20,583] [main] Total files: 103 [testng] [2024-07-02 12:10:20,583] [main] Scan time: 0.962 s (9 ms/file) [testng] [2024-07-02 12:10:20,583] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-02 12:10:27,460] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] 12:10:27,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:10:27,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-02_12-10-27.log] [testng] 12:10:27,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d8794b8 - End of configuration. [testng] [2024-07-02 12:10:27,489] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] 12:10:27,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:10:27,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-02_12-10-27.log] [testng] 12:10:27,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10221a1d - End of configuration. [testng] [2024-07-02 12:10:27,506] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] 12:10:27,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:10:27,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-02_12-10-27.log] [testng] 12:10:27,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@511e2292 - End of configuration. [testng] [2024-07-02 12:10:27,562] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] 12:10:27,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:10:27,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-02_12-10-27.log] [testng] 12:10:27,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4409ab1d - End of configuration. [testng] [2024-07-02 12:10:27,580] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] 12:10:27,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:10:27,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-02_12-10-27.log] [testng] 12:10:27,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b40e4ec - End of configuration. [testng] [2024-07-02 12:10:27,728] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] 12:10:27,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:10:27,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-02_12-10-27.log] [testng] 12:10:27,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b297a01 - End of configuration. [testng] [2024-07-02 12:10:27,748] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e4.tif: [testng] 12:10:27,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:10:27,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-02_12-10-27.log] [testng] 12:10:27,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4934f937 - End of configuration. [testng] [2024-07-02 12:10:27,813] [pool-1-thread-6] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] 12:10:27,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:10:27,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-02_12-10-27.log] [testng] 12:10:27,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f037021 - End of configuration. [testng] [2024-07-02 12:10:27,860] [pool-1-thread-5] Initializing /data/ofra/lowloss.dm3: [testng] 12:10:27,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:10:27,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-02_12-10-27.log] [testng] 12:10:27,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d2d2150 - End of configuration. [testng] [2024-07-02 12:10:27,869] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] 12:10:27,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:10:27,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-02_12-10-27.log] [testng] 12:10:27,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53cc4861 - End of configuration. [testng] [2024-07-02 12:10:27,920] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] 12:10:27,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:10:27,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-02_12-10-27.log] [testng] 12:10:27,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9cc5d7 - End of configuration. [testng] [2024-07-02 12:10:27,933] [pool-1-thread-2] Initializing /data/jay/recAmaghi.dm3: [testng] 12:10:27,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:10:27,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:27,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-02_12-10-27.log] [testng] 12:10:27,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eecbcfa - End of configuration. [testng] [2024-07-02 12:10:29,894] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-07-02 12:10:29,907] [pool-1-thread-1] Initializing /data/jay/smallerfile.dm3: [testng] [2024-07-02 12:10:29,920] [pool-1-thread-5] Initializing /data/jay/DMtest2.dm3: [testng] [2024-07-02 12:10:30,101] [pool-1-thread-6] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-07-02 12:10:30,530] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-07-02 12:10:30,541] [pool-1-thread-7] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-07-02 12:10:30,574] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-07-02 12:10:30,782] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-07-02 12:10:30,959] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-07-02 12:10:31,236] [pool-1-thread-8] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-07-02 12:10:31,493] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-07-02 12:10:31,664] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-07-02 12:10:31,730] [pool-1-thread-12] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-07-02 12:10:32,314] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-07-02 12:10:32,439] [pool-1-thread-1] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-07-02 12:10:32,856] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-07-02 12:10:32,865] [pool-1-thread-12] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-07-02 12:10:33,422] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-07-02 12:10:34,227] [pool-1-thread-11] Initializing /data/samples/test-tiles.dm3: [testng] [2024-07-02 12:10:34,710] [pool-1-thread-6] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-07-02 12:10:34,888] [pool-1-thread-12] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-07-02 12:10:34,948] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-07-02 12:10:35,237] [pool-1-thread-11] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-07-02 12:10:36,157] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-07-02 12:10:36,591] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-07-02 12:10:36,703] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-07-02 12:10:37,499] [pool-1-thread-5] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-07-02 12:10:38,068] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-07-02 12:10:38,654] [pool-1-thread-7] Initializing /data/jay/camtest1.dm3: [testng] [2024-07-02 12:10:38,708] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-07-02 12:10:39,218] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-07-02 12:10:39,501] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-07-02 12:10:39,796] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-07-02 12:10:39,808] [pool-1-thread-11] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-07-02 12:10:39,997] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-07-02 12:10:40,008] [pool-1-thread-6] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-07-02 12:10:40,644] [pool-1-thread-6] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-07-02 12:10:42,567] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-07-02 12:10:43,300] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-07-02 12:10:43,537] [pool-1-thread-12] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-07-02 12:10:43,872] [pool-1-thread-6] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-07-02 12:10:43,929] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-07-02 12:10:44,832] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-07-02 12:10:46,963] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-07-02 12:10:47,887] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-07-02 12:10:48,079] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-07-02 12:10:49,176] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-07-02 12:10:49,234] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-07-02 12:10:49,336] [pool-1-thread-6] Initializing /data/jay/dnasample.tif: [testng] [2024-07-02 12:10:49,599] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-07-02 12:10:49,976] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-07-02 12:10:50,055] [pool-1-thread-1] Initializing /data/jay/DMtest.dm3: [testng] [2024-07-02 12:10:50,167] [pool-1-thread-10] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-07-02 12:10:50,341] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-07-02 12:10:50,675] [pool-1-thread-12] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-07-02 12:10:50,989] [pool-1-thread-10] Initializing /data/jay/Carbon.34.dm3: [testng] [2024-07-02 12:10:51,670] [pool-1-thread-7] Initializing /data/qa-21761/example.dm4: [testng] [2024-07-02 12:10:52,289] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-07-02 12:10:52,414] [pool-1-thread-7] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-07-02 12:10:52,494] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-07-02 12:10:52,957] [pool-1-thread-4] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-07-02 12:10:53,540] [pool-1-thread-2] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-07-02 12:10:53,990] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-07-02 12:10:54,091] [pool-1-thread-6] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-07-02 12:10:54,168] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-07-02 12:10:54,692] [pool-1-thread-10] Initializing /data/qa-7642/8.dm4: [testng] [2024-07-02 12:10:54,874] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-07-02 12:10:55,859] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-07-02 12:10:55,920] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-07-02 12:10:56,043] [pool-1-thread-3] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-07-02 12:10:56,525] [pool-1-thread-10] Initializing /data/melissa/annotation-test.tif: [testng] [2024-07-02 12:10:56,740] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-07-02 12:10:56,923] [pool-1-thread-4] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-07-02 12:10:57,008] [pool-1-thread-10] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-07-02 12:10:57,204] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-07-02 12:10:57,248] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-07-02 12:10:57,589] [pool-1-thread-3] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-07-02 12:10:57,672] [pool-1-thread-2] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-07-02 12:10:57,805] [pool-1-thread-1] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-07-02 12:10:58,288] [pool-1-thread-11] Initializing /data/jay/dnasample1.dm3: [testng] [2024-07-02 12:10:58,297] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-07-02 12:10:58,530] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-07-02 12:10:58,947] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-07-02 12:10:58,979] [pool-1-thread-10] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-07-02 12:10:59,312] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-07-02 12:10:59,396] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 56 seconds Finished: SUCCESS