Started by upstream project "BIOFORMATS-test-repo" build number 109
originally caused by:
Started by upstream project "Trigger" build number 122
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7687598128154467480.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_16876_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 12:10:40,271 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 12:10:40,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 12:10:40,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:10:40,275 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:10:40,276 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 12:10:40,276 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 12:10:40,277 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 12:10:40,277 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:10:40,277 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:10:40,278 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 12:10:40,279 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 12:10:40,279 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 12:10:40,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 12:10:40,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 12:10:40,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 12:10:40,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 12:10:40,541 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 12:10:40,541 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 12:10:40,542 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 12:10:40,542 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 12:10:40,542 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 12:10:40,543 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 12:10:40,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 266 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-02 12:10:40,552] [main] java.version = 11.0.16
[testng] 12:10:40,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 12:10:40,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:10:40,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-02_12-10-40.log]
[testng] 12:10:40,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-07-02 12:10:40,626] [main] testng.directory = /data
[testng] [2024-07-02 12:10:40,626] [main] testng.configDirectory = /config
[testng] [2024-07-02 12:10:40,636] [main] testng.multiplier = 1.0
[testng] [2024-07-02 12:10:40,638] [main] testng.in-memory = false
[testng] [2024-07-02 12:10:40,638] [main] testng.allow-missing = false
[testng] [2024-07-02 12:10:40,638] [main] user.language = en
[testng] [2024-07-02 12:10:40,638] [main] user.country = ${user.country}
[testng] [2024-07-02 12:10:40,638] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-02 12:10:53,640] [main] ----------------------------------------
[testng] [2024-07-02 12:10:53,641] [main] Total files: 283
[testng] [2024-07-02 12:10:53,641] [main] Scan time: 13.002 s (45 ms/file)
[testng] [2024-07-02 12:10:53,641] [main] ----------------------------------------
[testng] [2024-07-02 12:13:18,498] [main] setId("/data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir") failed
[testng] java.lang.NullPointerException: null
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:432)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:13:26,926] [main] setId("/data/olympus/2017-04-21/zebra shg.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 1023 out of bounds for length 1023
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:16,012] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0001.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 66 out of bounds for length 66
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:16,747] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0002.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 66 out of bounds for length 66
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:17,174] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0003.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 66 out of bounds for length 66
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:17,844] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0004.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 66 out of bounds for length 66
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:18,352] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0005.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 66 out of bounds for length 66
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:18,960] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0006.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 66 out of bounds for length 66
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:19,673] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0007.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 66 out of bounds for length 66
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:20,384] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0008.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 66 out of bounds for length 66
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:16:20,711] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0009.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:21,065] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0010.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:21,468] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0011.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:21,872] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0012.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:22,335] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0013.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:22,782] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0014.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:23,247] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0015.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:23,897] [main] setId("/data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0016.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:26,430] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0001.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:26,934] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0002.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:27,413] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0003.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:27,622] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0004.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:27,832] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0005.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:28,023] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0006.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:28,212] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0007.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:28,382] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0008.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:28,539] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0009.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:28,981] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0010.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:29,780] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0011.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:30,492] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0012.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:30,761] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0013.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:31,056] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0014.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:31,200] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0015.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:31,755] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0016.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:32,306] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0017.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:32,798] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0018.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:33,351] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0019.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:33,989] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0020.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:34,402] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0021.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:35,370] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0022.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:35,928] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0023.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:36,252] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0024.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:36,664] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0025.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:36,868] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0026.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:37,279] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0027.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:37,491] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0028.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:37,681] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0029.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:37,886] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0030.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:38,094] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0031.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:38,325] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0032.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:38,490] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0033.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:38,663] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0034.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:38,830] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0035.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:39,001] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0036.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:39,374] [main] setId("/data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0037.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:42,613] [main] setId("/data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:16:42,662] [main] setId("/data/olympus/2021-04-20/overview 2 x_Cycle_01/overview 2 x_A01_G001_0001.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:08,188] [main] setId("/data/public/etienne/amy slice z stack_0001.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:09,732] [main] setId("/data/public/etienne/venus stack.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:12,175] [main] setId("/data/qa-16881/P10-50 D2.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:13,002] [main] setId("/data/qa-16881/P10-50 D2_0006.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:13,722] [main] setId("/data/qa-16881/P10-50 D2_0019.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:14,489] [main] setId("/data/qa-16881/P10D1 20150729.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:15,454] [main] setId("/data/qa-16881/P10D1 20150729_0019.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:16,201] [main] setId("/data/qa-16881/P10D1 20150729_0024.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:16,851] [main] setId("/data/qa-16881/W1-135 D6 New 20150818_0010.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:17,524] [main] setId("/data/qa-16881/W1-75 D11 New 20150825_0004.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:18,109] [main] setId("/data/qa-16881/W11-180 D3 20151021_0006.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:18,718] [main] setId("/data/qa-16881/W11-180 D3 20151021_0024.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:19,383] [main] setId("/data/qa-16881/W4-0 D14 New 20150828_0007.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:20,239] [main] setId("/data/qa-16881/W4-45 D5 New 20150816_0011.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:25,576] [main] setId("/data/qa-17270/image1.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:28,269] [main] setId("/data/qa-17331/60x zstack RS.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:17:29,934] [main] setId("/data/qa-17335/stimulation_0001_LSM.oir") failed
[testng] java.lang.NullPointerException: null
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:432)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:18:41,804] [main] setId("/data/qa-17922/example_multipart.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: null
[testng] [2024-07-02 12:19:01,770] [main] setId("/data/qa-17922/example_multipart_00001") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 1 out of bounds for length 1
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:19:20,513] [main] setId("/data/qa-17922/example_multipart_00002") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 1 out of bounds for length 1
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:19:37,385] [main] setId("/data/qa-17922/example_multipart_00003") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 1 out of bounds for length 1
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:19:50,294] [main] setId("/data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir") failed
[testng] java.lang.ArrayIndexOutOfBoundsException: Index 341 out of bounds for length 341
[testng] at loci.formats.in.OIRReader.initFile(OIRReader.java:420)
[testng] at loci.formats.FormatReader.setId(FormatReader.java:1480)
[testng] at loci.formats.ImageReader.setId(ImageReader.java:864)
[testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566)
[testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81)
[testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140)
[testng] at org.testng.TestRunner.initMethods(TestRunner.java:409)
[testng] at org.testng.TestRunner.init(TestRunner.java:235)
[testng] at org.testng.TestRunner.init(TestRunner.java:205)
[testng] at org.testng.TestRunner.<init>(TestRunner.java:153)
[testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522)
[testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157)
[testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111)
[testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273)
[testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260)
[testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114)
[testng] at org.testng.TestNG.run(TestNG.java:1031)
[testng] at org.testng.TestNG.privateMain(TestNG.java:1338)
[testng] at org.testng.TestNG.main(TestNG.java:1307)
[testng] [2024-07-02 12:19:53,766] [main] setId failed on [/data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir, /data/olympus/2017-04-21/zebra shg.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0001.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0002.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0003.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0004.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0005.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0006.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0007.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0008.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0009.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0010.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0011.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0012.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0013.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0014.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0015.oir, /data/olympus/2021-03-23/Dataset02_incl_stitched_image/image_A01_G001_0016.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0001.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0002.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0003.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0004.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0005.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0006.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0007.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0008.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0009.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0010.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0011.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0012.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0013.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0014.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0015.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0016.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0017.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0018.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0019.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0020.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0021.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0022.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0023.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0024.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0025.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0026.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0027.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0028.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0029.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0030.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0031.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0032.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0033.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0034.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0035.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0036.oir, /data/olympus/2021-04-20/20x_MATL_Cycle/20x_MATL_A01_G001_0037.oir, /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info, /data/olympus/2021-04-20/overview 2 x_Cycle_01/overview 2 x_A01_G001_0001.oir, /data/public/etienne/amy slice z stack_0001.oir, /data/public/etienne/venus stack.oir, /data/qa-16881/P10-50 D2.oir, /data/qa-16881/P10-50 D2_0006.oir, /data/qa-16881/P10-50 D2_0019.oir, /data/qa-16881/P10D1 20150729.oir, /data/qa-16881/P10D1 20150729_0019.oir, /data/qa-16881/P10D1 20150729_0024.oir, /data/qa-16881/W1-135 D6 New 20150818_0010.oir, /data/qa-16881/W1-75 D11 New 20150825_0004.oir, /data/qa-16881/W11-180 D3 20151021_0006.oir, /data/qa-16881/W11-180 D3 20151021_0024.oir, /data/qa-16881/W4-0 D14 New 20150828_0007.oir, /data/qa-16881/W4-45 D5 New 20150816_0011.oir, /data/qa-17270/image1.oir, /data/qa-17331/60x zstack RS.oir, /data/qa-17335/stimulation_0001_LSM.oir, /data/qa-17922/example_multipart.oir, /data/qa-17922/example_multipart_00001, /data/qa-17922/example_multipart_00002, /data/qa-17922/example_multipart_00003, /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir]
[testng] [TestNG] [Error]
[testng] The factory method class loci.tests.testng.FormatReaderTestFactory.createInstances() threw an exception
[testng] The tests failed.
BUILD FAILED
/bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest
Total time: 9 minutes 17 seconds
Build step 'Execute shell' marked build as failure
Finished: FAILURE