Started by upstream project "BIOFORMATS-test-repo" build number 11
originally caused by:
Started by upstream project "Trigger" build number 14
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins18126224870866835188.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_1691_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:13:34,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:13:34,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:13:34,747 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:13:34,748 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:13:34,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:13:34,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:13:34,749 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:13:34,749 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:13:34,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:13:34,750 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:13:34,750 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:13:34,750 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:13:35,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:13:35,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:13:35,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:13:35,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:13:35,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:13:35,103 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:13:35,103 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:13:35,104 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:13:35,104 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:13:35,105 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:13:35,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 355 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-25 01:13:35,122] [main] java.version = 1.8.0_342
[testng] 01:13:35,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:13:35,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:35,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-25_01-13-35.log]
[testng] 01:13:35,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-03-25 01:13:35,192] [main] testng.directory = /data
[testng] [2024-03-25 01:13:35,193] [main] testng.configDirectory = /config
[testng] [2024-03-25 01:13:35,211] [main] testng.multiplier = 1.0
[testng] [2024-03-25 01:13:35,212] [main] testng.in-memory = false
[testng] [2024-03-25 01:13:35,212] [main] testng.allow-missing = false
[testng] [2024-03-25 01:13:35,212] [main] user.language = fr
[testng] [2024-03-25 01:13:35,212] [main] user.country = FR
[testng] [2024-03-25 01:13:35,212] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-03-25 01:13:36,500] [main] ----------------------------------------
[testng] [2024-03-25 01:13:36,500] [main] Total files: 16
[testng] [2024-03-25 01:13:36,500] [main] Scan time: 1.288 s (80 ms/file)
[testng] [2024-03-25 01:13:36,501] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-25 01:13:47,663] [pool-1-thread-1] Initializing /data/samples/5400.afi:
[testng] 01:13:47,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:13:47,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:47,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-25_01-13-47.log]
[testng] 01:13:47,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a083c98 - End of configuration.
[testng] [2024-03-25 01:13:47,784] [pool-1-thread-12] Initializing /data/samples/5351.afi:
[testng] 01:13:47,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:13:47,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:47,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-25_01-13-47.log]
[testng] 01:13:47,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c294eb9 - End of configuration.
[testng] [2024-03-25 01:13:47,955] [pool-1-thread-11] Initializing /data/samples/5306.afi:
[testng] 01:13:47,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:13:47,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:47,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-25_01-13-47.log]
[testng] 01:13:47,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16d1ab5e - End of configuration.
[testng] [2024-03-25 01:13:48,058] [pool-1-thread-10] Initializing /data/samples/5383.afi:
[testng] 01:13:48,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:13:48,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:48,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-25_01-13-48.log]
[testng] 01:13:48,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d7e4d8e - End of configuration.
[testng] [2024-03-25 01:13:48,181] [pool-1-thread-9] Initializing /data/samples/5365.afi:
[testng] 01:13:48,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:13:48,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:48,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-25_01-13-48.log]
[testng] 01:13:48,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9a3d3c - End of configuration.
[testng] [2024-03-25 01:13:48,438] [pool-1-thread-8] Initializing /data/samples/5440.afi:
[testng] 01:13:48,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:13:48,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:48,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-25_01-13-48.log]
[testng] 01:13:48,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40a8c3c0 - End of configuration.
[testng] [2024-03-25 01:13:48,639] [pool-1-thread-7] Initializing /data/samples/5446.afi:
[testng] 01:13:48,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:13:48,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:48,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-25_01-13-48.log]
[testng] 01:13:48,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@710893e0 - End of configuration.
[testng] [2024-03-25 01:13:48,825] [pool-1-thread-6] Initializing /data/samples/5339.afi:
[testng] 01:13:48,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:13:48,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:48,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-25_01-13-48.log]
[testng] 01:13:48,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3983179c - End of configuration.
[testng] [2024-03-25 01:13:49,092] [pool-1-thread-5] Initializing /data/samples/5387.afi:
[testng] 01:13:49,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:13:49,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:49,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-25_01-13-49.log]
[testng] 01:13:49,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d0a6af8 - End of configuration.
[testng] [2024-03-25 01:13:49,244] [pool-1-thread-4] Initializing /data/samples/5407.afi:
[testng] 01:13:49,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:13:49,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:49,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-25_01-13-49.log]
[testng] 01:13:49,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d31047 - End of configuration.
[testng] [2024-03-25 01:13:49,347] [pool-1-thread-3] Initializing /data/samples/5347.afi:
[testng] 01:13:49,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:13:49,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:49,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-25_01-13-49.log]
[testng] 01:13:49,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2910e6af - End of configuration.
[testng] [2024-03-25 01:13:49,622] [pool-1-thread-2] Initializing /data/samples/5358.afi:
[testng] 01:13:49,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:13:49,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:49,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-25_01-13-49.log]
[testng] 01:13:49,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a2e29ff - End of configuration.
[testng] [2024-03-25 01:14:26,761] [pool-1-thread-2] Initializing /data/samples/5414.afi:
[testng] [2024-03-25 01:14:27,979] [pool-1-thread-1] Initializing /data/samples/5343.afi:
[testng] [2024-03-25 01:14:29,768] [pool-1-thread-8] Initializing /data/samples/5371.afi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 34 seconds
Finished: SUCCESS