Started by upstream project "<a href='/jenkins/job/BIOFORMATS-test-repo/' class='jenkins-table__link model-link model-link--float'>BIOFORMATS-test-repo</a>" build number <a href='/jenkins/job/BIOFORMATS-test-repo/109' class='jenkins-table__link model-link model-link--float'>109</a>
originally caused by:
 Started by upstream project "<a href='/jenkins/job/Trigger/' class='jenkins-table__link model-link model-link--float'>Trigger</a>" build number <a href='/jenkins/job/Trigger/122' class='jenkins-table__link model-link model-link--float'>122</a>
 originally caused by:
  Started by user <a href='/jenkins/user/devspace' class='jenkins-table__link model-link model-link--float'>devspace</a>
Running as SYSTEM
Building remotely on <a href='/jenkins/computer/docker' class='jenkins-table__link model-link model-link--float'>docker</a> (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9962909029826345314.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_16925_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 12:21:30,778 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 12:21:30,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 12:21:30,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 12:21:30,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 12:21:30,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 12:21:30,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 12:21:30,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 12:21:30,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 12:21:30,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 12:21:30,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 12:21:30,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 12:21:30,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 12:21:30,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 12:21:30,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 12:21:30,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 12:21:30,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 12:21:30,971 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 12:21:30,972 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 12:21:30,972 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 12:21:30,972 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 12:21:30,972 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 12:21:30,973 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 12:21:30,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-02 12:21:30,982] [main] java.version = 11.0.16
   [testng] 12:21:30,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 12:21:30,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:31,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-02_12-21-31.log]
   [testng] 12:21:31,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-07-02 12:21:31,029] [main] testng.directory = /data
   [testng] [2024-07-02 12:21:31,029] [main] testng.configDirectory = /config
   [testng] [2024-07-02 12:21:31,038] [main] testng.multiplier = 1.0
   [testng] [2024-07-02 12:21:31,039] [main] testng.in-memory = false
   [testng] [2024-07-02 12:21:31,040] [main] testng.allow-missing = false
   [testng] [2024-07-02 12:21:31,040] [main] user.language = en
   [testng] [2024-07-02 12:21:31,040] [main] user.country = ${user.country}
   [testng] [2024-07-02 12:21:31,040] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-02 12:21:32,136] [main] ----------------------------------------
   [testng] [2024-07-02 12:21:32,136] [main] Total files: 20
   [testng] [2024-07-02 12:21:32,136] [main] Scan time: 1.096 s (54 ms/file)
   [testng] [2024-07-02 12:21:32,136] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-02 12:21:32,625] [pool-1-thread-1] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] 12:21:32,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 12:21:32,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-02_12-21-32.log]
   [testng] 12:21:32,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0bb243 - End of configuration.
   [testng] [2024-07-02 12:21:32,646] [pool-1-thread-12] Initializing /data/ascb/c191.st: 
   [testng] 12:21:32,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 12:21:32,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-02_12-21-32.log]
   [testng] 12:21:32,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31caf268 - End of configuration.
   [testng] [2024-07-02 12:21:32,661] [pool-1-thread-11] Initializing /data/dan/two.mrc: 
   [testng] 12:21:32,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 12:21:32,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-02_12-21-32.log]
   [testng] 12:21:32,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6020a301 - End of configuration.
   [testng] [2024-07-02 12:21:32,677] [pool-1-thread-10] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] 12:21:32,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 12:21:32,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-02_12-21-32.log]
   [testng] 12:21:32,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132c2ea0 - End of configuration.
   [testng] [2024-07-02 12:21:32,692] [pool-1-thread-9] Initializing /data/samples/golgi.mrc: 
   [testng] 12:21:32,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 12:21:32,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-02_12-21-32.log]
   [testng] 12:21:32,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b97b877 - End of configuration.
   [testng] [2024-07-02 12:21:32,723] [pool-1-thread-8] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 12:21:32,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 12:21:32,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-02_12-21-32.log]
   [testng] 12:21:32,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1516e912 - End of configuration.
   [testng] [2024-07-02 12:21:32,749] [pool-1-thread-7] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 12:21:32,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 12:21:32,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-02_12-21-32.log]
   [testng] 12:21:32,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63632b3b - End of configuration.
   [testng] [2024-07-02 12:21:32,760] [pool-1-thread-6] Initializing /data/ascb/514_9903.mrc: 
   [testng] 12:21:32,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 12:21:32,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-02_12-21-32.log]
   [testng] 12:21:32,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2afd0497 - End of configuration.
   [testng] [2024-07-02 12:21:32,776] [pool-1-thread-5] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] 12:21:32,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 12:21:32,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-02_12-21-32.log]
   [testng] 12:21:32,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@129f7a31 - End of configuration.
   [testng] [2024-07-02 12:21:32,790] [pool-1-thread-4] Initializing /data/jcb/thylakoid5.rec: 
   [testng] 12:21:32,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 12:21:32,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-02_12-21-32.log]
   [testng] 12:21:32,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3a6287 - End of configuration.
   [testng] [2024-07-02 12:21:32,805] [pool-1-thread-3] Initializing /data/dan/one.mrc: 
   [testng] 12:21:32,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 12:21:32,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-02_12-21-32.log]
   [testng] 12:21:32,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a5ee39c - End of configuration.
   [testng] [2024-07-02 12:21:32,829] [pool-1-thread-2] Initializing /data/ascb/cfa1071.mrc: 
   [testng] 12:21:32,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 12:21:32,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:32,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-02_12-21-32.log]
   [testng] 12:21:32,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5a5bd4 - End of configuration.
   [testng] [2024-07-02 12:21:33,997] [pool-1-thread-7] Initializing /data/ascb/c191ali.mrc: 
   [testng] [2024-07-02 12:21:34,041] [pool-1-thread-1] Initializing /data/strand/Series1_A.mrc: 
   [testng] [2024-07-02 12:21:34,049] [pool-1-thread-8] Initializing /data/samples/1160.mrc: 
   [testng] [2024-07-02 12:21:34,145] [pool-1-thread-9] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] [2024-07-02 12:21:34,253] [pool-1-thread-5] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] [2024-07-02 12:21:34,262] [pool-1-thread-12] Initializing /data/dan/three.mrc: 
   [testng] [2024-07-02 12:21:34,423] [pool-1-thread-4] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] [2024-07-02 12:21:34,570] [pool-1-thread-3] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS