Started by upstream project "BIOFORMATS-test-repo" build number 110
originally caused by:
Started by upstream project "Trigger" build number 123
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1725188011601727190.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17155_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:13:22,564 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:13:22,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:13:22,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:13:22,567 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:13:22,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:13:22,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:13:22,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:13:22,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:13:22,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:13:22,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:13:22,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:13:22,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:13:22,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:13:22,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:13:22,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:13:22,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:13:22,895 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:13:22,896 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:13:22,896 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:13:22,897 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:13:22,897 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:13:22,898 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:13:22,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 329 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-03 02:13:22,915] [main] java.version = 17.0.2
[testng] 02:13:22,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:13:22,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:22,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-03_02-13-22.log]
[testng] 02:13:22,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-03 02:13:22,995] [main] testng.directory = /data
[testng] [2024-07-03 02:13:22,996] [main] testng.configDirectory = /config
[testng] [2024-07-03 02:13:23,014] [main] testng.multiplier = 1.0
[testng] [2024-07-03 02:13:23,016] [main] testng.in-memory = false
[testng] [2024-07-03 02:13:23,016] [main] testng.allow-missing = false
[testng] [2024-07-03 02:13:23,016] [main] user.language = en
[testng] [2024-07-03 02:13:23,016] [main] user.country = ${user.country}
[testng] [2024-07-03 02:13:23,016] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-03 02:18:32,761] [main] ----------------------------------------
[testng] [2024-07-03 02:18:32,761] [main] Total files: 2169
[testng] [2024-07-03 02:18:32,761] [main] Scan time: 309.745 s (142 ms/file)
[testng] [2024-07-03 02:18:32,761] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-03 02:36:45,988] [pool-1-thread-1] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml:
[testng] 02:36:45,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:36:45,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:45,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-03_02-36-45.log]
[testng] 02:36:45,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59c721ee - End of configuration.
[testng] [2024-07-03 02:36:48,399] [pool-1-thread-12] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml:
[testng] 02:36:48,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:36:48,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:48,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-03_02-36-48.log]
[testng] 02:36:48,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1429c71b - End of configuration.
[testng] [2024-07-03 02:36:48,660] [pool-1-thread-11] Initializing /data/ruben/plate_002/experiment_descriptor.xml:
[testng] 02:36:48,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:36:48,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:48,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-03_02-36-48.log]
[testng] 02:36:48,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2404a842 - End of configuration.
[testng] [2024-07-03 02:36:48,739] [pool-1-thread-10] Initializing /data/nadine/experiment_descriptor.xml:
[testng] 02:36:48,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:36:48,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:48,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-03_02-36-48.log]
[testng] 02:36:48,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bef57b1 - End of configuration.
[testng] [2024-07-03 02:36:49,059] [pool-1-thread-9] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml:
[testng] 02:36:49,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:36:49,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:49,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-03_02-36-49.log]
[testng] 02:36:49,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@93d1b98 - End of configuration.
[testng] [2024-07-03 02:37:14,429] [pool-1-thread-8] Initializing /data/embl/Maik_001/experiment_descriptor.xml:
[testng] 02:37:14,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:37:14,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:14,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-03_02-37-14.log]
[testng] 02:37:14,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50041011 - End of configuration.
[testng] [2024-07-03 02:37:24,343] [pool-1-thread-7] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml:
[testng] 02:37:24,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:37:24,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:24,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-03_02-37-24.log]
[testng] 02:37:24,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3641c20 - End of configuration.
[testng] [2024-07-03 02:38:36,713] [pool-1-thread-6] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml:
[testng] 02:38:36,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:38:36,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:36,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-03_02-38-36.log]
[testng] 02:38:36,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe7b522 - End of configuration.
[testng] [2024-07-03 02:41:20,086] [pool-1-thread-5] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml:
[testng] 02:41:20,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:41:20,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:41:20,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-03_02-41-20.log]
[testng] 02:41:20,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6156bc8f - End of configuration.
[testng] [2024-07-03 02:42:21,767] [pool-1-thread-4] Initializing /data/gideon/experiment_descriptor.xml:
[testng] 02:42:21,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:42:21,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:42:21,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-03_02-42-21.log]
[testng] 02:42:21,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@606b1490 - End of configuration.
[testng] [2024-07-03 02:42:54,136] [pool-1-thread-3] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml:
[testng] 02:42:54,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:42:54,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:42:54,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-03_02-42-54.log]
[testng] 02:42:54,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12dc94da - End of configuration.
[testng] [2024-07-03 02:42:55,043] [pool-1-thread-2] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml:
[testng] 02:42:55,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:42:55,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:42:55,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-03_02-42-55.log]
[testng] 02:42:55,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25065365 - End of configuration.
[testng] [2024-07-03 02:44:49,988] [pool-1-thread-10] Initializing /data/juergen/Experiment/experiment_descriptor.xml:
[testng] [2024-07-03 02:44:52,761] [pool-1-thread-10] Initializing /data/christian/example/experiment_descriptor.xml:
[testng] [2024-07-03 02:44:54,389] [pool-1-thread-10] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml:
[testng] [2024-07-03 02:47:03,015] [pool-1-thread-8] Initializing /data/ruben/20100827_004/experiment_descriptor.xml:
[testng] [2024-07-03 02:49:59,906] [pool-1-thread-11] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 40 minutes 31 seconds
Finished: SUCCESS