Started by upstream project "BIOFORMATS-test-repo" build number 2 originally caused by: Started by upstream project "Trigger" build number 3 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15081562388351843137.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_172_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:30:45,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:30:45,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:30:45,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:45,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:45,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:30:45,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:30:45,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:30:45,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:45,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:45,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:30:45,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:30:45,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:30:45,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:30:45,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:30:45,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:30:45,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:30:45,530 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:30:45,530 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:30:45,530 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:30:45,530 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:30:45,531 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:30:45,531 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:30:45,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 304 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-15 00:30:45,554] [main] java.version = 1.8.0_342 [testng] 00:30:45,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:30:45,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:45,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_00-30-45.log] [testng] 00:30:45,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-15 00:30:45,624] [main] testng.directory = /data [testng] [2024-03-15 00:30:45,624] [main] testng.configDirectory = /config [testng] [2024-03-15 00:30:45,637] [main] testng.multiplier = 1.0 [testng] [2024-03-15 00:30:45,637] [main] testng.in-memory = false [testng] [2024-03-15 00:30:45,637] [main] testng.allow-missing = false [testng] [2024-03-15 00:30:45,638] [main] user.language = en [testng] [2024-03-15 00:30:45,638] [main] user.country = ${user.country} [testng] [2024-03-15 00:30:45,638] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-15 00:30:46,083] [main] ---------------------------------------- [testng] [2024-03-15 00:30:46,083] [main] Total files: 21 [testng] [2024-03-15 00:30:46,083] [main] Scan time: 0.445 s (21 ms/file) [testng] [2024-03-15 00:30:46,083] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-15 00:30:48,968] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 00:30:48,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:30:48,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:48,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_00-30-48.log] [testng] 00:30:48,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1be5579a - End of configuration. [testng] [2024-03-15 00:30:49,016] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 00:30:49,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:49,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_00-30-49.log] [testng] 00:30:49,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ba6644d - End of configuration. [testng] [2024-03-15 00:30:49,146] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] 00:30:49,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:49,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_00-30-49.log] [testng] 00:30:49,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ebfa364 - End of configuration. [testng] [2024-03-15 00:30:49,184] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:30:49,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:49,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_00-30-49.log] [testng] 00:30:49,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a1b7ccc - End of configuration. [testng] [2024-03-15 00:30:49,250] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:30:49,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:49,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_00-30-49.log] [testng] 00:30:49,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72bd6fa6 - End of configuration. [testng] [2024-03-15 00:30:49,297] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] 00:30:49,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:30:49,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_00-30-49.log] [testng] 00:30:49,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331fe4f4 - End of configuration. [testng] [2024-03-15 00:30:49,326] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 00:30:49,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:30:49,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_00-30-49.log] [testng] 00:30:49,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146706b0 - End of configuration. [testng] [2024-03-15 00:30:49,348] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 00:30:49,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:30:49,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_00-30-49.log] [testng] 00:30:49,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b67832d - End of configuration. [testng] [2024-03-15 00:30:49,367] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:30:49,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:30:49,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_00-30-49.log] [testng] 00:30:49,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f323388 - End of configuration. [testng] [2024-03-15 00:30:49,390] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:30:49,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:30:49,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_00-30-49.log] [testng] 00:30:49,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b3bd04 - End of configuration. [testng] [2024-03-15 00:30:49,413] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] 00:30:49,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:30:49,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_00-30-49.log] [testng] 00:30:49,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d95d70 - End of configuration. [testng] [2024-03-15 00:30:49,433] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] 00:30:49,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:30:49,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:49,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_00-30-49.log] [testng] 00:30:49,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3238418f - End of configuration. [testng] [2024-03-15 00:30:52,250] [pool-1-thread-12] Initializing /data/samples/XING_B32.TGA: [testng] [2024-03-15 00:30:52,274] [pool-1-thread-6] Initializing /data/samples/MARBLES.TGA: [testng] [2024-03-15 00:30:52,296] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] [2024-03-15 00:30:52,311] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA: [testng] [2024-03-15 00:30:52,350] [pool-1-thread-10] Initializing /data/samples/UTC32.TGA: [testng] [2024-03-15 00:30:52,369] [pool-1-thread-1] Initializing /data/samples/XING_B16.TGA: [testng] [2024-03-15 00:30:52,411] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA: [testng] [2024-03-15 00:30:52,428] [pool-1-thread-7] Initializing /data/samples/UTC24.TGA: [testng] [2024-03-15 00:30:52,468] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS