Started by upstream project "BIOFORMATS-test-repo" build number 111
originally caused by:
Started by upstream project "Trigger" build number 124
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins11602326797982562600.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17231_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:27:41,110 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:27:41,111 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:27:41,111 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:41,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:27:41,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:27:41,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:27:41,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:27:41,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:41,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:27:41,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:27:41,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:27:41,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:27:41,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:27:41,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:27:41,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:27:41,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:27:41,294 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:27:41,294 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:27:41,294 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:27:41,295 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:27:41,295 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:27:41,296 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:27:41,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-04 01:27:41,304] [main] java.version = 21
[testng] 01:27:41,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:27:41,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:41,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-04_01-27-41.log]
[testng] 01:27:41,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-07-04 01:27:41,355] [main] testng.directory = /data
[testng] [2024-07-04 01:27:41,356] [main] testng.configDirectory = /config
[testng] [2024-07-04 01:27:41,364] [main] testng.multiplier = 1.0
[testng] [2024-07-04 01:27:41,365] [main] testng.in-memory = false
[testng] [2024-07-04 01:27:41,365] [main] testng.allow-missing = false
[testng] [2024-07-04 01:27:41,365] [main] user.language = en
[testng] [2024-07-04 01:27:41,365] [main] user.country = ${user.country}
[testng] [2024-07-04 01:27:41,365] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-04 01:27:41,719] [main] ----------------------------------------
[testng] [2024-07-04 01:27:41,720] [main] Total files: 21
[testng] [2024-07-04 01:27:41,720] [main] Scan time: 0.354 s (16 ms/file)
[testng] [2024-07-04 01:27:41,720] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-04 01:27:42,478] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA:
[testng] 01:27:42,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:27:42,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-04_01-27-42.log]
[testng] 01:27:42,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37bb7600 - End of configuration.
[testng] [2024-07-04 01:27:42,495] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA:
[testng] 01:27:42,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:27:42,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-04_01-27-42.log]
[testng] 01:27:42,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604c2618 - End of configuration.
[testng] [2024-07-04 01:27:42,509] [pool-1-thread-11] Initializing /data/samples/UBW8.TGA:
[testng] 01:27:42,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:27:42,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-04_01-27-42.log]
[testng] 01:27:42,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d78af2 - End of configuration.
[testng] [2024-07-04 01:27:42,529] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA:
[testng] 01:27:42,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:27:42,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-04_01-27-42.log]
[testng] 01:27:42,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@699338c9 - End of configuration.
[testng] [2024-07-04 01:27:42,539] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA:
[testng] 01:27:42,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:27:42,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-04_01-27-42.log]
[testng] 01:27:42,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b74ca4e - End of configuration.
[testng] [2024-07-04 01:27:42,550] [pool-1-thread-8] Initializing /data/samples/XING_B24.TGA:
[testng] 01:27:42,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:27:42,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-04_01-27-42.log]
[testng] 01:27:42,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6edb84fe - End of configuration.
[testng] [2024-07-04 01:27:42,559] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA:
[testng] 01:27:42,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:27:42,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-04_01-27-42.log]
[testng] 01:27:42,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c37dfb - End of configuration.
[testng] [2024-07-04 01:27:42,569] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA:
[testng] 01:27:42,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:27:42,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-04_01-27-42.log]
[testng] 01:27:42,571 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10e44396 - End of configuration.
[testng] [2024-07-04 01:27:42,581] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA:
[testng] 01:27:42,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:27:42,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-04_01-27-42.log]
[testng] 01:27:42,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d24778b - End of configuration.
[testng] [2024-07-04 01:27:42,594] [pool-1-thread-4] Initializing /data/samples/FLAG_T16.TGA:
[testng] 01:27:42,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:27:42,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-04_01-27-42.log]
[testng] 01:27:42,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6add677e - End of configuration.
[testng] [2024-07-04 01:27:42,603] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA:
[testng] 01:27:42,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:27:42,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-04_01-27-42.log]
[testng] 01:27:42,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc348d1 - End of configuration.
[testng] [2024-07-04 01:27:42,612] [pool-1-thread-2] Initializing /data/samples/UTC16.TGA:
[testng] 01:27:42,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:27:42,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-04_01-27-42.log]
[testng] 01:27:42,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54220cff - End of configuration.
[testng] [2024-07-04 01:27:44,294] [pool-1-thread-4] Initializing /data/samples/XING_T16.TGA:
[testng] [2024-07-04 01:27:44,303] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA:
[testng] [2024-07-04 01:27:44,315] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA:
[testng] [2024-07-04 01:27:44,324] [pool-1-thread-3] Initializing /data/samples/FLAG_B24.TGA:
[testng] [2024-07-04 01:27:44,331] [pool-1-thread-6] Initializing /data/samples/CCM8.TGA:
[testng] [2024-07-04 01:27:44,337] [pool-1-thread-8] Initializing /data/samples/XING_T24.TGA:
[testng] [2024-07-04 01:27:44,347] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA:
[testng] [2024-07-04 01:27:44,362] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA:
[testng] [2024-07-04 01:27:44,371] [pool-1-thread-5] Initializing /data/samples/FLAG_B16.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS