Started by upstream project "BIOFORMATS-test-repo" build number 112
originally caused by:
Started by upstream project "Trigger" build number 125
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4980171184795849802.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17474_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:21:09,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:21:09,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:21:09,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:21:09,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:21:09,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:21:09,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:21:09,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:21:09,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:21:09,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:21:09,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:21:09,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:21:09,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:21:09,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:21:09,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:21:09,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:21:09,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:21:09,794 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:21:09,794 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:21:09,794 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:21:09,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:21:09,795 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:21:09,796 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:21:09,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 304 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-05 02:21:09,807] [main] java.version = 1.8.0_342
[testng] 02:21:09,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:21:09,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:09,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_02-21-09.log]
[testng] 02:21:09,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-05 02:21:09,862] [main] testng.directory = /data
[testng] [2024-07-05 02:21:09,862] [main] testng.configDirectory = /config
[testng] [2024-07-05 02:21:09,878] [main] testng.multiplier = 1.0
[testng] [2024-07-05 02:21:09,879] [main] testng.in-memory = false
[testng] [2024-07-05 02:21:09,879] [main] testng.allow-missing = false
[testng] [2024-07-05 02:21:09,879] [main] user.language = en
[testng] [2024-07-05 02:21:09,879] [main] user.country = ${user.country}
[testng] [2024-07-05 02:21:09,879] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-05 02:21:16,578] [main] ----------------------------------------
[testng] [2024-07-05 02:21:16,578] [main] Total files: 67
[testng] [2024-07-05 02:21:16,579] [main] Scan time: 6.699 s (99 ms/file)
[testng] [2024-07-05 02:21:16,579] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 59 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-05 02:21:39,854] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims:
[testng] 02:21:39,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:21:39,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:39,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-05_02-21-39.log]
[testng] 02:21:39,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17676384 - End of configuration.
[testng] [2024-07-05 02:21:39,910] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0000.ims:
[testng] 02:21:39,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:21:39,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:39,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-05_02-21-39.log]
[testng] 02:21:39,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@383121f8 - End of configuration.
[testng] [2024-07-05 02:21:39,931] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0005.ims:
[testng] 02:21:39,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:21:39,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:39,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-05_02-21-39.log]
[testng] 02:21:39,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44439959 - End of configuration.
[testng] [2024-07-05 02:21:39,948] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0003.ims:
[testng] 02:21:39,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:21:39,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:39,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-05_02-21-39.log]
[testng] 02:21:39,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7341f387 - End of configuration.
[testng] [2024-07-05 02:21:39,964] [pool-1-thread-9] Initializing /data/jcb/fig 6B GFP-AP-2d.ims:
[testng] 02:21:39,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:21:39,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:39,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-05_02-21-39.log]
[testng] 02:21:39,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fe47c84 - End of configuration.
[testng] [2024-07-05 02:21:40,010] [pool-1-thread-8] Initializing /data/generated/mri-stack-original.ims:
[testng] 02:21:40,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:21:40,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:40,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-05_02-21-40.log]
[testng] 02:21:40,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c906087 - End of configuration.
[testng] [2024-07-05 02:21:40,037] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0015.ims:
[testng] 02:21:40,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:21:40,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:40,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-05_02-21-40.log]
[testng] 02:21:40,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a938f37 - End of configuration.
[testng] [2024-07-05 02:21:40,064] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0009.ims:
[testng] 02:21:40,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:21:40,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:40,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-05_02-21-40.log]
[testng] 02:21:40,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@737c12e3 - End of configuration.
[testng] [2024-07-05 02:21:40,082] [pool-1-thread-5] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims:
[testng] 02:21:40,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:21:40,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:40,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-05_02-21-40.log]
[testng] 02:21:40,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff2d2b7 - End of configuration.
[testng] [2024-07-05 02:21:40,151] [pool-1-thread-4] Initializing /data/kay/Imaris503_test_Kay.ims:
[testng] 02:21:40,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:21:40,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:40,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-05_02-21-40.log]
[testng] 02:21:40,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c5ee04a - End of configuration.
[testng] [2024-07-05 02:21:40,178] [pool-1-thread-3] Initializing /data/oliver/Stack2_u16Bit.ims:
[testng] 02:21:40,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:21:40,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:40,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-05_02-21-40.log]
[testng] 02:21:40,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11f1a1b2 - End of configuration.
[testng] [2024-07-05 02:21:40,221] [pool-1-thread-2] Initializing /data/oliver/Stack2_float32Bit.ims:
[testng] 02:21:40,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:21:40,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:21:40,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-05_02-21-40.log]
[testng] 02:21:40,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@541df1a - End of configuration.
[testng] [2024-07-05 02:21:42,291] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0012.ims:
[testng] [2024-07-05 02:21:42,307] [pool-1-thread-12] Initializing /data/public/davemason/Convallaria_3C_10T_confocal_IMS3.ims:
[testng] [2024-07-05 02:21:42,361] [pool-1-thread-10] Initializing /data/public/davemason/TransFactors_2C_SRRF_IMS3.ims:
[testng] [2024-07-05 02:21:42,420] [pool-1-thread-6] Initializing /data/jake/p75Cherry M2 010-3~B.ims:
[testng] [2024-07-05 02:21:42,468] [pool-1-thread-8] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims:
[testng] [2024-07-05 02:21:42,525] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0010.ims:
[testng] [2024-07-05 02:21:42,650] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0006.ims:
[testng] [2024-07-05 02:21:43,067] [pool-1-thread-3] Initializing /data/qa-8019/wrong_num_dimensions.ims:
BUILD SUCCESSFUL
Total time: 1 minute 43 seconds
Finished: SUCCESS