Started by upstream project "BIOFORMATS-test-repo" build number 113
originally caused by:
Started by upstream project "Trigger" build number 126
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18268579561571460819.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17664_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:24:19,766 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:24:19,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:24:19,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:24:19,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:24:19,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:24:19,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:24:19,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:24:19,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:24:19,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:24:19,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:24:19,774 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:24:19,774 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:24:19,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:24:19,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:24:20,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:24:20,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:24:20,016 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:24:20,016 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:24:20,016 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:24:20,017 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:24:20,017 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:24:20,018 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:24:20,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-06 02:24:20,035] [main] java.version = 11.0.16
[testng] 02:24:20,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:24:20,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:20,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-06_02-24-20.log]
[testng] 02:24:20,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-07-06 02:24:20,088] [main] testng.directory = /data
[testng] [2024-07-06 02:24:20,088] [main] testng.configDirectory = /config
[testng] [2024-07-06 02:24:20,099] [main] testng.multiplier = 1.0
[testng] [2024-07-06 02:24:20,101] [main] testng.in-memory = false
[testng] [2024-07-06 02:24:20,101] [main] testng.allow-missing = false
[testng] [2024-07-06 02:24:20,101] [main] user.language = en
[testng] [2024-07-06 02:24:20,101] [main] user.country = ${user.country}
[testng] [2024-07-06 02:24:20,101] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-06 02:24:29,398] [main] ----------------------------------------
[testng] [2024-07-06 02:24:29,398] [main] Total files: 944
[testng] [2024-07-06 02:24:29,398] [main] Scan time: 9.297 s (9 ms/file)
[testng] [2024-07-06 02:24:29,399] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-06 02:24:57,359] [pool-1-thread-1] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 02:24:57,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:24:57,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:57,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-06_02-24-57.log]
[testng] 02:24:57,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8077a7 - End of configuration.
[testng] [2024-07-06 02:24:57,450] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] 02:24:57,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:24:57,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:57,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-06_02-24-57.log]
[testng] 02:24:57,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a7b5593 - End of configuration.
[testng] [2024-07-06 02:24:57,501] [pool-1-thread-11] Initializing /data/primate/Leica_Image.tif:
[testng] 02:24:57,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:24:57,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:57,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-06_02-24-57.log]
[testng] 02:24:57,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@452991c3 - End of configuration.
[testng] [2024-07-06 02:24:57,575] [pool-1-thread-10] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 02:24:57,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:24:57,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:57,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-06_02-24-57.log]
[testng] 02:24:57,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d69b076 - End of configuration.
[testng] [2024-07-06 02:24:57,604] [pool-1-thread-9] Initializing /data/brian/Series002_z01.tif:
[testng] 02:24:57,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:24:57,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:57,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-06_02-24-57.log]
[testng] 02:24:57,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62659b24 - End of configuration.
[testng] [2024-07-06 02:24:57,644] [pool-1-thread-8] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] 02:24:57,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:24:57,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:57,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-06_02-24-57.log]
[testng] 02:24:57,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21fc73f5 - End of configuration.
[testng] [2024-07-06 02:25:02,525] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] 02:25:02,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:25:02,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:02,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-06_02-25-02.log]
[testng] 02:25:02,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fb549d2 - End of configuration.
[testng] [2024-07-06 02:25:02,571] [pool-1-thread-6] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] 02:25:02,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:25:02,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:02,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-06_02-25-02.log]
[testng] 02:25:02,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fd807ab - End of configuration.
[testng] [2024-07-06 02:25:02,608] [pool-1-thread-5] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 02:25:02,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:25:02,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:02,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-06_02-25-02.log]
[testng] 02:25:02,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58432731 - End of configuration.
[testng] [2024-07-06 02:25:02,639] [pool-1-thread-4] Initializing /data/brian/Series002_z00_ch00.tif:
[testng] 02:25:02,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:25:02,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:02,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-06_02-25-02.log]
[testng] 02:25:02,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cd14542 - End of configuration.
[testng] [2024-07-06 02:25:02,669] [pool-1-thread-3] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] 02:25:02,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:25:02,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:02,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-06_02-25-02.log]
[testng] 02:25:02,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48da454b - End of configuration.
[testng] [2024-07-06 02:25:02,692] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 02:25:02,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:25:02,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:25:02,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-06_02-25-02.log]
[testng] 02:25:02,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a3a492 - End of configuration.
[testng] [2024-07-06 02:25:04,837] [pool-1-thread-1] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] [2024-07-06 02:25:04,872] [pool-1-thread-12] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] [2024-07-06 02:25:04,907] [pool-1-thread-2] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 minutes 59 seconds
Finished: SUCCESS