Started by upstream project "BIOFORMATS-test-repo" build number 113
originally caused by:
Started by upstream project "Trigger" build number 126
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins62345539393377268.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17679_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:35:09,369 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:35:09,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:35:09,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:35:09,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:35:09,373 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:35:09,373 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:35:09,374 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:35:09,374 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:35:09,374 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:35:09,375 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:35:09,376 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:35:09,376 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:35:09,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:35:09,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:35:09,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:35:09,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:35:09,616 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:35:09,616 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:35:09,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:35:09,617 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:35:09,617 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:35:09,618 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:35:09,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 244 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-06 02:35:09,628] [main] java.version = 11.0.16
[testng] 02:35:09,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:35:09,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:09,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-06_02-35-09.log]
[testng] 02:35:09,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-07-06 02:35:09,683] [main] testng.directory = /data
[testng] [2024-07-06 02:35:09,683] [main] testng.configDirectory = /config
[testng] [2024-07-06 02:35:09,694] [main] testng.multiplier = 1.0
[testng] [2024-07-06 02:35:09,695] [main] testng.in-memory = false
[testng] [2024-07-06 02:35:09,696] [main] testng.allow-missing = false
[testng] [2024-07-06 02:35:09,696] [main] user.language = en
[testng] [2024-07-06 02:35:09,696] [main] user.country = ${user.country}
[testng] [2024-07-06 02:35:09,696] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-06 02:35:10,784] [main] ----------------------------------------
[testng] [2024-07-06 02:35:10,784] [main] Total files: 22
[testng] [2024-07-06 02:35:10,784] [main] Scan time: 1.088 s (49 ms/file)
[testng] [2024-07-06 02:35:10,784] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-06 02:35:18,211] [pool-1-thread-1] Initializing /data/xiuwen/head2.seq:
[testng] 02:35:18,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:35:18,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-06_02-35-18.log]
[testng] 02:35:18,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8ac53c5 - End of configuration.
[testng] [2024-07-06 02:35:18,322] [pool-1-thread-12] Initializing /data/converted/dub01.pic:
[testng] 02:35:18,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:35:18,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-06_02-35-18.log]
[testng] 02:35:18,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@756ab44c - End of configuration.
[testng] [2024-07-06 02:35:18,359] [pool-1-thread-11] Initializing /data/converted/clown.tif:
[testng] 02:35:18,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:35:18,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-06_02-35-18.log]
[testng] 02:35:18,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50fc2296 - End of configuration.
[testng] [2024-07-06 02:35:18,387] [pool-1-thread-10] Initializing /data/samples/PROBE.TIF:
[testng] 02:35:18,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:35:18,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-06_02-35-18.log]
[testng] 02:35:18,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63d42644 - End of configuration.
[testng] [2024-07-06 02:35:18,410] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw:
[testng] 02:35:18,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:35:18,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-06_02-35-18.log]
[testng] 02:35:18,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72acda9a - End of configuration.
[testng] [2024-07-06 02:35:18,457] [pool-1-thread-8] Initializing /data/converted/clown8c.tif:
[testng] 02:35:18,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:35:18,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-06_02-35-18.log]
[testng] 02:35:18,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7980cd53 - End of configuration.
[testng] [2024-07-06 02:35:18,492] [pool-1-thread-7] Initializing /data/converted/mitosis-test.tif:
[testng] 02:35:18,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:35:18,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-06_02-35-18.log]
[testng] 02:35:18,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2413bd1c - End of configuration.
[testng] [2024-07-06 02:35:18,637] [pool-1-thread-6] Initializing /data/alex/AFAset0003.ips:
[testng] 02:35:18,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:35:18,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-06_02-35-18.log]
[testng] 02:35:18,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47439c0 - End of configuration.
[testng] [2024-07-06 02:35:18,659] [pool-1-thread-5] Initializing /data/converted/dub01.ipw:
[testng] 02:35:18,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:35:18,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-06_02-35-18.log]
[testng] 02:35:18,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75276e2d - End of configuration.
[testng] [2024-07-06 02:35:18,690] [pool-1-thread-4] Initializing /data/converted/clown.seq:
[testng] 02:35:18,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:35:18,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-06_02-35-18.log]
[testng] 02:35:18,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4398f700 - End of configuration.
[testng] [2024-07-06 02:35:18,724] [pool-1-thread-3] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 02:35:18,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:35:18,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-06_02-35-18.log]
[testng] 02:35:18,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ad6434 - End of configuration.
[testng] [2024-07-06 02:35:18,761] [pool-1-thread-2] Initializing /data/converted/clown.ipw:
[testng] 02:35:18,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:35:18,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:18,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-06_02-35-18.log]
[testng] 02:35:18,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bd6dbb2 - End of configuration.
[testng] [2024-07-06 02:35:20,679] [pool-1-thread-4] Initializing /data/converted/mitosis-test.seq:
[testng] [2024-07-06 02:35:20,712] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-07-06 02:35:20,785] [pool-1-thread-11] Initializing /data/samples/HEART.SEQ:
[testng] [2024-07-06 02:35:20,811] [pool-1-thread-8] Initializing /data/converted/clown8c.seq:
[testng] [2024-07-06 02:35:20,823] [pool-1-thread-9] Initializing /data/converted/dub01.seq:
[testng] [2024-07-06 02:35:20,849] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw:
[testng] [2024-07-06 02:35:20,860] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF:
[testng] [2024-07-06 02:35:20,893] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] [2024-07-06 02:35:20,944] [pool-1-thread-7] Initializing /data/samples/FLDUAL.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS