Started by upstream project "BIOFORMATS-test-repo" build number 114
originally caused by:
Started by upstream project "Trigger" build number 127
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins2906870920299107351.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17736_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:29:14,564 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:29:14,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:29:14,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:29:14,567 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:29:14,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:29:14,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:29:14,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:29:14,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:29:14,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:29:14,569 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:29:14,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:29:14,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:29:14,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:29:14,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:29:14,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:29:14,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:29:14,790 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:29:14,790 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:29:14,791 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:29:14,791 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:29:14,791 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:29:14,792 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:29:14,792 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 223 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-07 01:29:14,804] [main] java.version = 17.0.2
[testng] 01:29:14,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:29:14,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:14,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_01-29-14.log]
[testng] 01:29:14,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-07 01:29:14,865] [main] testng.directory = /data
[testng] [2024-07-07 01:29:14,865] [main] testng.configDirectory = /config
[testng] [2024-07-07 01:29:14,876] [main] testng.multiplier = 1.0
[testng] [2024-07-07 01:29:14,877] [main] testng.in-memory = false
[testng] [2024-07-07 01:29:14,877] [main] testng.allow-missing = false
[testng] [2024-07-07 01:29:14,877] [main] user.language = en
[testng] [2024-07-07 01:29:14,877] [main] user.country = ${user.country}
[testng] [2024-07-07 01:29:14,877] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-07 01:29:15,280] [main] ----------------------------------------
[testng] [2024-07-07 01:29:15,280] [main] Total files: 25
[testng] [2024-07-07 01:29:15,281] [main] Scan time: 0.403 s (16 ms/file)
[testng] [2024-07-07 01:29:15,281] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-07 01:29:17,419] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 01:29:17,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:29:17,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_01-29-17.log]
[testng] 01:29:17,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c57d1d - End of configuration.
[testng] [2024-07-07 01:29:17,536] [pool-1-thread-12] Initializing /data/misc/planet.pict:
[testng] 01:29:17,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:29:17,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_01-29-17.log]
[testng] 01:29:17,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df9fdb - End of configuration.
[testng] [2024-07-07 01:29:17,627] [pool-1-thread-11] Initializing /data/jqd/32bit.pict:
[testng] 01:29:17,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:29:17,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_01-29-17.log]
[testng] 01:29:17,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa4df47 - End of configuration.
[testng] [2024-07-07 01:29:17,767] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT:
[testng] 01:29:17,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:29:17,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_01-29-17.log]
[testng] 01:29:17,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f115d20 - End of configuration.
[testng] [2024-07-07 01:29:17,800] [pool-1-thread-9] Initializing /data/misc/planet.png:
[testng] 01:29:17,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:29:17,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_01-29-17.log]
[testng] 01:29:17,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf1ffcb - End of configuration.
[testng] [2024-07-07 01:29:17,821] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:29:17,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:29:17,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_01-29-17.log]
[testng] 01:29:17,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b62e28d - End of configuration.
[testng] [2024-07-07 01:29:17,839] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 01:29:17,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:29:17,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_01-29-17.log]
[testng] 01:29:17,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46126742 - End of configuration.
[testng] [2024-07-07 01:29:17,879] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 01:29:17,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:29:17,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_01-29-17.log]
[testng] 01:29:17,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dbc9680 - End of configuration.
[testng] [2024-07-07 01:29:17,896] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] 01:29:17,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:29:17,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_01-29-17.log]
[testng] 01:29:17,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a511d88 - End of configuration.
[testng] [2024-07-07 01:29:17,905] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 01:29:17,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:29:17,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_01-29-17.log]
[testng] 01:29:17,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39dbc034 - End of configuration.
[testng] [2024-07-07 01:29:18,177] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 01:29:18,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:29:18,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:18,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_01-29-18.log]
[testng] 01:29:18,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@370c073 - End of configuration.
[testng] [2024-07-07 01:29:18,198] [pool-1-thread-2] Initializing /data/misc/planet2.pict:
[testng] 01:29:18,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:29:18,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:18,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_01-29-18.log]
[testng] 01:29:18,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31eb3162 - End of configuration.
[testng] [2024-07-07 01:29:19,878] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict:
[testng] [2024-07-07 01:29:19,889] [pool-1-thread-5] Initializing /data/brian/images/VENUS.pct:
[testng] [2024-07-07 01:29:19,914] [pool-1-thread-3] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-07-07 01:29:19,935] [pool-1-thread-8] Initializing /data/brian/images/WHT.PCT:
[testng] [2024-07-07 01:29:19,954] [pool-1-thread-9] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-07-07 01:29:20,381] [pool-1-thread-10] Initializing /data/misc/swlogo.pict:
[testng] [2024-07-07 01:29:20,404] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-07-07 01:29:20,425] [pool-1-thread-2] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-07-07 01:29:20,446] [pool-1-thread-12] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-07-07 01:29:20,465] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] [2024-07-07 01:29:20,734] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-07-07 01:29:20,937] [pool-1-thread-6] Initializing /data/brian/images/YEL.PCT:
[testng] [2024-07-07 01:29:20,968] [pool-1-thread-5] Initializing /data/jqd/mire32.pict:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS