Started by upstream project "BIOFORMATS-test-repo" build number 114
originally caused by:
Started by upstream project "Trigger" build number 127
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2525065270588804735.sh
+ '[' ultraview = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17776_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:04:22,143 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:04:22,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:04:22,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:04:22,147 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:04:22,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:04:22,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:04:22,149 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:04:22,149 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:04:22,149 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:04:22,151 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:04:22,151 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:04:22,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:04:22,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:04:22,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:04:22,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:04:22,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:04:22,521 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:04:22,521 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:04:22,521 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:04:22,521 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:04:22,521 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:04:22,522 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:04:22,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 373 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-07 02:04:22,532] [main] java.version = 17.0.2
[testng] 02:04:22,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:04:22,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:22,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_02-04-22.log]
[testng] 02:04:22,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-07 02:04:22,613] [main] testng.directory = /data
[testng] [2024-07-07 02:04:22,614] [main] testng.configDirectory = /config
[testng] [2024-07-07 02:04:22,625] [main] testng.multiplier = 1.0
[testng] [2024-07-07 02:04:22,626] [main] testng.in-memory = false
[testng] [2024-07-07 02:04:22,627] [main] testng.allow-missing = false
[testng] [2024-07-07 02:04:22,627] [main] user.language = en
[testng] [2024-07-07 02:04:22,627] [main] user.country = ${user.country}
[testng] [2024-07-07 02:04:22,627] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-07 02:04:26,334] [main] ----------------------------------------
[testng] [2024-07-07 02:04:26,335] [main] Total files: 19
[testng] [2024-07-07 02:04:26,335] [main] Scan time: 3.707 s (195 ms/file)
[testng] [2024-07-07 02:04:26,335] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-07 02:04:27,935] [pool-1-thread-1] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm:
[testng] 02:04:27,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:04:27,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:27,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_02-04-27.log]
[testng] 02:04:27,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33f75b74 - End of configuration.
[testng] [2024-07-07 02:04:27,976] [pool-1-thread-12] Initializing /data/todd/movement-1.htm:
[testng] 02:04:27,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:04:27,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:27,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_02-04-27.log]
[testng] 02:04:27,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0f2a78 - End of configuration.
[testng] [2024-07-07 02:04:28,077] [pool-1-thread-11] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM:
[testng] 02:04:28,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:04:28,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_02-04-28.log]
[testng] 02:04:28,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@373973fd - End of configuration.
[testng] [2024-07-07 02:04:28,101] [pool-1-thread-10] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM:
[testng] 02:04:28,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:04:28,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_02-04-28.log]
[testng] 02:04:28,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620c6886 - End of configuration.
[testng] [2024-07-07 02:04:28,121] [pool-1-thread-9] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM:
[testng] 02:04:28,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:04:28,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_02-04-28.log]
[testng] 02:04:28,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@183c3c23 - End of configuration.
[testng] [2024-07-07 02:04:28,143] [pool-1-thread-8] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM:
[testng] 02:04:28,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:04:28,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_02-04-28.log]
[testng] 02:04:28,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@310ebd70 - End of configuration.
[testng] [2024-07-07 02:04:28,163] [pool-1-thread-7] Initializing /data/chad/DIC/EZRA200820080626102637.HTM:
[testng] 02:04:28,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:04:28,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_02-04-28.log]
[testng] 02:04:28,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57207e3a - End of configuration.
[testng] [2024-07-07 02:04:28,187] [pool-1-thread-6] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm:
[testng] 02:04:28,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:04:28,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_02-04-28.log]
[testng] 02:04:28,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7139e823 - End of configuration.
[testng] [2024-07-07 02:04:28,209] [pool-1-thread-5] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM:
[testng] 02:04:28,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:04:28,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_02-04-28.log]
[testng] 02:04:28,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f0e9cfc - End of configuration.
[testng] [2024-07-07 02:04:28,233] [pool-1-thread-4] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm:
[testng] 02:04:28,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:04:28,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_02-04-28.log]
[testng] 02:04:28,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dffaa71 - End of configuration.
[testng] [2024-07-07 02:04:28,252] [pool-1-thread-3] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm:
[testng] 02:04:28,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:04:28,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_02-04-28.log]
[testng] 02:04:28,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51678a7 - End of configuration.
[testng] [2024-07-07 02:04:28,296] [pool-1-thread-2] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm:
[testng] 02:04:28,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:04:28,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:28,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_02-04-28.log]
[testng] 02:04:28,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@778fe85d - End of configuration.
[testng] [2024-07-07 02:04:31,492] [pool-1-thread-1] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM:
[testng] [2024-07-07 02:04:31,511] [pool-1-thread-7] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm:
[testng] [2024-07-07 02:04:31,534] [pool-1-thread-10] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm:
[testng] [2024-07-07 02:04:31,552] [pool-1-thread-12] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM:
[testng] [2024-07-07 02:04:31,573] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM:
[testng] [2024-07-07 02:04:31,660] [pool-1-thread-6] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 49 seconds
Finished: SUCCESS