Started by upstream project "BIOFORMATS-test-repo" build number 114
originally caused by:
Started by upstream project "Trigger" build number 127
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins7631595506753680262.sh
+ '[' apng = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17812_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:16:00,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:16:00,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:16:00,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:16:00,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:16:00,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:16:00,290 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:16:00,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:16:00,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:16:00,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:16:00,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:16:00,294 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:16:00,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:16:00,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:16:00,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:16:00,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:16:00,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:16:00,555 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:16:00,555 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:16:00,555 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:16:00,555 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:16:00,556 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:16:00,556 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:16:00,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-07 02:16:00,566] [main] java.version = 17.0.2
[testng] 02:16:00,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:16:00,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:00,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_02-16-00.log]
[testng] 02:16:00,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-07 02:16:00,616] [main] testng.directory = /data
[testng] [2024-07-07 02:16:00,616] [main] testng.configDirectory = /config
[testng] [2024-07-07 02:16:00,625] [main] testng.multiplier = 1.0
[testng] [2024-07-07 02:16:00,626] [main] testng.in-memory = false
[testng] [2024-07-07 02:16:00,627] [main] testng.allow-missing = false
[testng] [2024-07-07 02:16:00,627] [main] user.language = en
[testng] [2024-07-07 02:16:00,627] [main] user.country = ${user.country}
[testng] [2024-07-07 02:16:00,627] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-07 02:16:00,978] [main] ----------------------------------------
[testng] [2024-07-07 02:16:00,979] [main] Total files: 21
[testng] [2024-07-07 02:16:00,979] [main] Scan time: 0.351 s (16 ms/file)
[testng] [2024-07-07 02:16:00,979] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-07 02:16:02,004] [pool-1-thread-1] Initializing /data/samples/phug_logo.png:
[testng] 02:16:02,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:16:02,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_02-16-02.log]
[testng] 02:16:02,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9d3416d - End of configuration.
[testng] [2024-07-07 02:16:02,083] [pool-1-thread-12] Initializing /data/samples/joanna_viera01.png:
[testng] 02:16:02,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:16:02,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_02-16-02.log]
[testng] 02:16:02,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@330c6ec9 - End of configuration.
[testng] [2024-07-07 02:16:02,092] [pool-1-thread-11] Initializing /data/samples/Matrix.png:
[testng] 02:16:02,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:16:02,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_02-16-02.log]
[testng] 02:16:02,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7772c0c7 - End of configuration.
[testng] [2024-07-07 02:16:02,098] [pool-1-thread-10] Initializing /data/samples/PhugAnimation3.png:
[testng] 02:16:02,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:16:02,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_02-16-02.log]
[testng] 02:16:02,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df068b9 - End of configuration.
[testng] [2024-07-07 02:16:02,110] [pool-1-thread-9] Initializing /data/samples/william_wong02.png:
[testng] 02:16:02,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:16:02,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_02-16-02.log]
[testng] 02:16:02,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8f9a0aa - End of configuration.
[testng] [2024-07-07 02:16:02,126] [pool-1-thread-8] Initializing /data/samples/monkey_apng.png:
[testng] 02:16:02,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:16:02,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_02-16-02.log]
[testng] 02:16:02,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@147c6d4f - End of configuration.
[testng] [2024-07-07 02:16:02,137] [pool-1-thread-7] Initializing /data/samples/chompy2.png:
[testng] 02:16:02,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:16:02,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_02-16-02.log]
[testng] 02:16:02,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7919de0b - End of configuration.
[testng] [2024-07-07 02:16:02,148] [pool-1-thread-6] Initializing /data/samples/william_wong01.png:
[testng] 02:16:02,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:16:02,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_02-16-02.log]
[testng] 02:16:02,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b0a0e8 - End of configuration.
[testng] [2024-07-07 02:16:02,164] [pool-1-thread-5] Initializing /data/samples/daniel_coltri_one.png:
[testng] 02:16:02,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:16:02,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_02-16-02.log]
[testng] 02:16:02,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1870b4a8 - End of configuration.
[testng] [2024-07-07 02:16:02,176] [pool-1-thread-4] Initializing /data/qa-7473/x.png:
[testng] 02:16:02,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:16:02,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_02-16-02.log]
[testng] 02:16:02,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2934c063 - End of configuration.
[testng] [2024-07-07 02:16:02,186] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_two.png:
[testng] 02:16:02,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:16:02,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_02-16-02.log]
[testng] 02:16:02,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34aededf - End of configuration.
[testng] [2024-07-07 02:16:02,197] [pool-1-thread-2] Initializing /data/colin/test.sfstdge.png:
[testng] 02:16:02,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:16:02,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_02-16-02.log]
[testng] 02:16:02,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64fc35e0 - End of configuration.
[testng] [2024-07-07 02:16:03,945] [pool-1-thread-3] Initializing /data/samples/Sun.png:
[testng] [2024-07-07 02:16:03,954] [pool-1-thread-11] Initializing /data/samples/william_wong05.png:
[testng] [2024-07-07 02:16:03,963] [pool-1-thread-7] Initializing /data/samples/atom.png:
[testng] [2024-07-07 02:16:03,968] [pool-1-thread-9] Initializing /data/samples/MoonPhases.png:
[testng] [2024-07-07 02:16:03,972] [pool-1-thread-1] Initializing /data/samples/william_wong04.png:
[testng] [2024-07-07 02:16:03,976] [pool-1-thread-5] Initializing /data/samples/orbit.png:
[testng] [2024-07-07 02:16:03,981] [pool-1-thread-8] Initializing /data/qa-7473/n.tif:
[testng] [2024-07-07 02:16:04,017] [pool-1-thread-6] Initializing /data/samples/StarV838.png:
[testng] [2024-07-07 02:16:04,023] [pool-1-thread-10] Initializing /data/samples/spinfox.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS