Started by upstream project "BIOFORMATS-test-repo" build number 114
originally caused by:
Started by upstream project "Trigger" build number 127
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6240409894466865367.sh
+ '[' cellr = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17835_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:34:17,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:34:17,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:34:17,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:34:17,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:34:17,186 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:34:17,187 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:34:17,187 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:34:17,187 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:34:17,187 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
[testng] 02:34:17,188 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
[testng] 02:34:17,188 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 423 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-07 02:34:17,197] [main] java.version = 17.0.2
[testng] 02:34:17,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:34:17,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:17,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-07_02-34-17.log]
[testng] 02:34:17,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-07 02:34:17,243] [main] testng.directory = /data
[testng] [2024-07-07 02:34:17,243] [main] testng.configDirectory = /config
[testng] [2024-07-07 02:34:17,252] [main] testng.multiplier = 1.0
[testng] [2024-07-07 02:34:17,252] [main] testng.in-memory = false
[testng] [2024-07-07 02:34:17,253] [main] testng.allow-missing = false
[testng] [2024-07-07 02:34:17,253] [main] user.language = en
[testng] [2024-07-07 02:34:17,253] [main] user.country = ${user.country}
[testng] [2024-07-07 02:34:17,253] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-07 02:34:42,212] [main] ----------------------------------------
[testng] [2024-07-07 02:34:42,213] [main] Total files: 256
[testng] [2024-07-07 02:34:42,213] [main] Scan time: 24.959 s (97 ms/file)
[testng] [2024-07-07 02:34:42,213] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-07 02:35:22,076] [pool-1-thread-1] Initializing /data/qa-17107/example2/example2_d.mtb:
[testng] 02:35:22,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:35:22,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:22,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-07_02-35-22.log]
[testng] 02:35:22,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60064173 - End of configuration.
[testng] [2024-07-07 02:35:22,154] [pool-1-thread-12] Initializing /data/clare/set_27_on_d.mtb:
[testng] 02:35:22,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:35:22,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:22,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-07_02-35-22.log]
[testng] 02:35:22,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee2d47b - End of configuration.
[testng] [2024-07-07 02:35:24,187] [pool-1-thread-11] Initializing /data/viktorie/test/test_d.mtb:
[testng] 02:35:24,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:35:24,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:24,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-07_02-35-24.log]
[testng] 02:35:24,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@698668d9 - End of configuration.
[testng] [2024-07-07 02:35:24,224] [pool-1-thread-10] Initializing /data/kees/Mariaelena_d.mtb:
[testng] 02:35:24,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:35:24,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:24,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-07_02-35-24.log]
[testng] 02:35:24,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719e3858 - End of configuration.
[testng] [2024-07-07 02:35:24,763] [pool-1-thread-9] Initializing /data/colin/07-06-21/07-06-21_d.mtb:
[testng] 02:35:24,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:35:24,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:24,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-07_02-35-24.log]
[testng] 02:35:24,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30760d38 - End of configuration.
[testng] [2024-07-07 02:35:25,348] [pool-1-thread-8] Initializing /data/colin/08-10-09/08-10-09_d.mtb:
[testng] 02:35:25,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:35:25,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:25,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-07_02-35-25.log]
[testng] 02:35:25,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75464448 - End of configuration.
[testng] [2024-07-07 02:35:32,832] [pool-1-thread-7] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb:
[testng] 02:35:32,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:35:32,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:32,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-07_02-35-32.log]
[testng] 02:35:32,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9cae10e - End of configuration.
[testng] [2024-07-07 02:35:32,874] [pool-1-thread-6] Initializing /data/viktorie/Structure.jpg:
[testng] 02:35:32,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:35:32,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:32,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-07_02-35-32.log]
[testng] 02:35:32,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60c636ac - End of configuration.
[testng] [2024-07-07 02:35:32,904] [pool-1-thread-5] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb:
[testng] 02:35:32,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:35:32,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:32,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-07_02-35-32.log]
[testng] 02:35:32,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ca2012 - End of configuration.
[testng] [2024-07-07 02:35:34,275] [pool-1-thread-4] Initializing /data/qa-17107/plain/Plain_d.mtb:
[testng] 02:35:34,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:35:34,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:34,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-07_02-35-34.log]
[testng] 02:35:34,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f81a390 - End of configuration.
[testng] [2024-07-07 02:35:34,305] [pool-1-thread-3] Initializing /data/viktorie/2Channels.tif:
[testng] 02:35:34,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:35:34,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:34,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-07_02-35-34.log]
[testng] 02:35:34,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2642bc7b - End of configuration.
[testng] [2024-07-07 02:35:34,378] [pool-1-thread-2] Initializing /data/viktorie/090902/090902_d.mtb:
[testng] 02:35:34,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:35:34,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:34,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-07_02-35-34.log]
[testng] 02:35:34,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573c9442 - End of configuration.
[testng] [2024-07-07 02:35:37,149] [pool-1-thread-11] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 6 seconds
Finished: SUCCESS