Started by upstream project "BIOFORMATS-test-repo" build number 115
originally caused by:
Started by upstream project "Trigger" build number 128
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins8268201361109110779.sh
+ '[' samples = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17879_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:24:32,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:24:32,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:24:32,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:24:32,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:24:32,427 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:24:32,427 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:24:32,427 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:24:32,428 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:24:32,428 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:24:32,429 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:24:32,429 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 424 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-08 01:24:32,442] [main] java.version = 1.8.0_342
[testng] 01:24:32,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:24:32,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:32,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-08_01-24-32.log]
[testng] 01:24:32,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-08 01:24:32,518] [main] testng.directory = /data
[testng] [2024-07-08 01:24:32,518] [main] testng.configDirectory = /config
[testng] [2024-07-08 01:24:32,538] [main] testng.multiplier = 1.0
[testng] [2024-07-08 01:24:32,538] [main] testng.in-memory = false
[testng] [2024-07-08 01:24:32,538] [main] testng.allow-missing = false
[testng] [2024-07-08 01:24:32,539] [main] user.language = fr
[testng] [2024-07-08 01:24:32,539] [main] user.country = FR
[testng] [2024-07-08 01:24:32,539] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-08 01:24:58,553] [main] ----------------------------------------
[testng] [2024-07-08 01:24:58,553] [main] Total files: 164
[testng] [2024-07-08 01:24:58,553] [main] Scan time: 26.014 s (158 ms/file)
[testng] [2024-07-08 01:24:58,553] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 59 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-08 01:25:08,671] [pool-1-thread-1] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK:
[testng] 01:25:08,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:25:08,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:08,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-08_01-25-08.log]
[testng] 01:25:08,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ac4f3b2 - End of configuration.
[testng] [2024-07-08 01:25:08,719] [pool-1-thread-12] Initializing /data/openjpeg/FacadeERROPJW.bmp:
[testng] 01:25:08,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:25:08,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:08,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-08_01-25-08.log]
[testng] 01:25:08,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58a5b1ba - End of configuration.
[testng] [2024-07-08 01:25:08,756] [pool-1-thread-11] Initializing /data/ome/t0_pos1-0_5x.lsm:
[testng] 01:25:08,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:25:08,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:08,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-08_01-25-08.log]
[testng] 01:25:08,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f79dfaf - End of configuration.
[testng] [2024-07-08 01:25:08,810] [pool-1-thread-10] Initializing /data/ome/Adultmidsection.lsm:
[testng] 01:25:08,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:25:08,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:08,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-08_01-25-08.log]
[testng] 01:25:08,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@535b4b05 - End of configuration.
[testng] [2024-07-08 01:25:08,854] [pool-1-thread-9] Initializing /data/ome/654Atemp.stk:
[testng] 01:25:08,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:25:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:08,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-08_01-25-08.log]
[testng] 01:25:08,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@438edd96 - End of configuration.
[testng] [2024-07-08 01:25:09,038] [pool-1-thread-8] Initializing /data/openjpeg/Cevennes1.bmp:
[testng] 01:25:09,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:25:09,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:09,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-08_01-25-09.log]
[testng] 01:25:09,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32977da6 - End of configuration.
[testng] [2024-07-08 01:25:09,053] [pool-1-thread-7] Initializing /data/ome/embryo.lsm:
[testng] 01:25:09,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:25:09,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:09,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-08_01-25-09.log]
[testng] 01:25:09,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25e7363b - End of configuration.
[testng] [2024-07-08 01:25:09,094] [pool-1-thread-6] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg:
[testng] 01:25:09,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:25:09,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:09,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-08_01-25-09.log]
[testng] 01:25:09,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22918cfd - End of configuration.
[testng] [2024-07-08 01:25:09,107] [pool-1-thread-5] Initializing /data/ome/Cmidmusgfp1.lsm:
[testng] 01:25:09,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:25:09,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:09,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-08_01-25-09.log]
[testng] 01:25:09,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb05591 - End of configuration.
[testng] [2024-07-08 01:25:09,140] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.ppm:
[testng] 01:25:09,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:25:09,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:09,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-08_01-25-09.log]
[testng] 01:25:09,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625baa59 - End of configuration.
[testng] [2024-07-08 01:25:09,151] [pool-1-thread-3] Initializing /data/ome/worm.tiff:
[testng] 01:25:09,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:25:09,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:09,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-08_01-25-09.log]
[testng] 01:25:09,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64603732 - End of configuration.
[testng] [2024-07-08 01:25:09,229] [pool-1-thread-2] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF:
[testng] 01:25:09,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:25:09,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:09,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-08_01-25-09.log]
[testng] 01:25:09,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@87b22e4 - End of configuration.
[testng] [2024-07-08 01:25:11,374] [pool-1-thread-6] Initializing /data/ome/C1.lsm:
[testng] [2024-07-08 01:25:11,394] [pool-1-thread-1] Initializing /data/sdub/sdub.pattern:
[testng] [2024-07-08 01:25:11,582] [pool-1-thread-5] Initializing /data/openjpeg/thumb_Bretagne2.jpg:
[testng] [2024-07-08 01:25:11,595] [pool-1-thread-7] Initializing /data/ome/arwen0205_raw00201.pic:
[testng] [2024-07-08 01:25:11,617] [pool-1-thread-10] Initializing /data/openjpeg/Rome.ppm:
[testng] [2024-07-08 01:25:11,623] [pool-1-thread-2] Initializing /data/openjpeg/Facade.bmp:
[testng] [2024-07-08 01:25:11,818] [pool-1-thread-11] Initializing /data/ome/anusgfpzs.lsm:
[testng] [2024-07-08 01:25:11,863] [pool-1-thread-5] Initializing /data/ome/C1midmusnorm.lsm:
[testng] [2024-07-08 01:25:12,000] [pool-1-thread-4] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk:
[testng] [2024-07-08 01:25:12,090] [pool-1-thread-9] Initializing /data/openjpeg/Bretagne1.bmp:
[testng] [2024-07-08 01:25:12,115] [pool-1-thread-10] Initializing /data/openjpeg/Cevennes2.jp2:
[testng] [2024-07-08 01:25:12,498] [pool-1-thread-6] Initializing /data/openjpeg/Facade.pnm:
[testng] [2024-07-08 01:25:12,506] [pool-1-thread-12] Initializing /data/openjpeg/Rome.bmp:
[testng] [2024-07-08 01:25:12,638] [pool-1-thread-5] Initializing /data/ome/tiffany.color.tiff:
[testng] [2024-07-08 01:25:12,731] [pool-1-thread-9] Initializing /data/ome/cb_1.r3d:
[testng] [2024-07-08 01:25:12,944] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.j2k:
[testng] [2024-07-08 01:25:13,022] [pool-1-thread-11] Initializing /data/openjpeg/Bretagne2.ppm:
[testng] [2024-07-08 01:25:13,139] [pool-1-thread-12] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF:
[testng] [2024-07-08 01:25:13,571] [pool-1-thread-4] Initializing /data/ome/compressed2ChZ.lsm:
[testng] [2024-07-08 01:25:13,591] [pool-1-thread-1] Initializing /data/ome/tinyTest.d3d.dv:
[testng] [2024-07-08 01:25:13,700] [pool-1-thread-5] Initializing /data/openjpeg/Cevennes2.ppm:
[testng] [2024-07-08 01:25:13,723] [pool-1-thread-1] Initializing /data/openjpeg/thumb_facade.jpg:
[testng] [2024-07-08 01:25:13,921] [pool-1-thread-9] Initializing /data/openjpeg/Bretagne2.bmp:
[testng] [2024-07-08 01:25:13,926] [pool-1-thread-7] Initializing /data/openjpeg/Cevennes1.j2k:
[testng] [2024-07-08 01:25:13,945] [pool-1-thread-12] Initializing /data/ome/CHOBI_d3d.dv:
[testng] [2024-07-08 01:25:13,957] [pool-1-thread-1] Initializing /data/mouse-kidney/mouse-kidney.lif:
[testng] [2024-07-08 01:25:14,091] [pool-1-thread-5] Initializing /data/ome/011B1_Morph.HTD:
[testng] [2024-07-08 01:25:15,047] [pool-1-thread-8] Initializing /data/ome/210502-0min-NFKB-4.r3d:
[testng] [2024-07-08 01:25:15,204] [pool-1-thread-6] Initializing /data/openjpeg/Rome.jp2:
[testng] [2024-07-08 01:25:15,311] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes2.bmp:
[testng] [2024-07-08 01:25:15,343] [pool-1-thread-10] Initializing /data/ome/C1lowmusgfp.lsm:
[testng] [2024-07-08 01:25:15,364] [pool-1-thread-12] Initializing /data/kidney_TFl/kidney_TFl.pattern:
[testng] [2024-07-08 01:25:15,711] [pool-1-thread-11] Initializing /data/openjpeg/thumb_Cevennes2.jpg:
[testng] [2024-07-08 01:25:15,748] [pool-1-thread-1] Initializing /data/openjpeg/thumb_Cevennes1.jpg:
[testng] [2024-07-08 01:25:15,953] [pool-1-thread-3] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF:
[testng] [2024-07-08 01:25:16,066] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne1.ppm:
[testng] [2024-07-08 01:25:16,074] [pool-1-thread-4] Initializing /data/ome/n2_plate18_P24_w1.tif:
[testng] [2024-07-08 01:25:16,217] [pool-1-thread-11] Initializing /data/TAABA/TAABA.pattern:
[testng] [2024-07-08 01:25:18,373] [pool-1-thread-2] Initializing /data/ome/t1_pos1-0_5x.lsm:
[testng] [2024-07-08 01:25:18,443] [pool-1-thread-1] Initializing /data/openjpeg/Bretagne2.j2k:
[testng] [2024-07-08 01:25:18,591] [pool-1-thread-8] Initializing /data/openjpeg/thumb_Rome.jpg:
[testng] [2024-07-08 01:25:18,656] [pool-1-thread-10] Initializing /data/ome/Cpharynxzs1.lsm:
[testng] [2024-07-08 01:25:18,758] [pool-1-thread-8] Initializing /data/openjpeg/FacadeERROPJ.bmp:
[testng] [2024-07-08 01:25:18,765] [pool-1-thread-12] Initializing /data/openjpeg/thumb_Bretagne1.jpg:
[testng] [2024-07-08 01:25:19,153] [pool-1-thread-12] Initializing /data/10-31 E1/10-31 E1.tif:
[testng] [2024-07-08 01:25:19,435] [pool-1-thread-4] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK:
[testng] [2024-07-08 01:25:19,584] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Speedway.jpg:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 3127, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 47 seconds
Finished: SUCCESS