Started by upstream project "BIOFORMATS-test-repo" build number 1
originally caused by:
Started by upstream project "Trigger" build number 1
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3664739507915933943.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/devspace/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 15:59:44,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 15:59:44,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 15:59:44,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:59:44,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:59:44,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 15:59:44,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 15:59:44,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 15:59:44,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:59:44,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:59:44,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 15:59:44,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 15:59:44,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 15:59:44,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 15:59:44,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 15:59:44,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 15:59:44,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 15:59:44,351 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 15:59:44,351 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 15:59:44,351 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 15:59:44,352 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 15:59:44,352 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 15:59:44,353 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 15:59:44,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-14 15:59:44,362] [main] java.version = 21
[testng] 15:59:44,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 15:59:44,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:59:44,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-14_15-59-44.log]
[testng] 15:59:44,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-03-14 15:59:44,409] [main] testng.directory = /data
[testng] [2024-03-14 15:59:44,409] [main] testng.configDirectory = /config
[testng] [2024-03-14 15:59:44,418] [main] testng.multiplier = 1.0
[testng] [2024-03-14 15:59:44,419] [main] testng.in-memory = false
[testng] [2024-03-14 15:59:44,419] [main] testng.allow-missing = false
[testng] [2024-03-14 15:59:44,419] [main] user.language = en
[testng] [2024-03-14 15:59:44,419] [main] user.country = ${user.country}
[testng] [2024-03-14 15:59:44,419] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-14 15:59:52,035] [main] ----------------------------------------
[testng] [2024-03-14 15:59:52,035] [main] Total files: 21
[testng] [2024-03-14 15:59:52,035] [main] Scan time: 7.616 s (362 ms/file)
[testng] [2024-03-14 15:59:52,036] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-14 16:00:04,248] [pool-1-thread-1] Initializing /data/stefan/001_q11.txt:
[testng] 16:00:04,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 16:00:04,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:04,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-14_16-00-04.log]
[testng] 16:00:04,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1586b738 - End of configuration.
[testng] [2024-03-14 16:00:05,225] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt:
[testng] 16:00:05,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 16:00:05,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:05,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-14_16-00-05.log]
[testng] 16:00:05,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@698ed0db - End of configuration.
[testng] [2024-03-14 16:00:05,770] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt:
[testng] 16:00:05,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 16:00:05,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:05,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-14_16-00-05.log]
[testng] 16:00:05,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61ac108 - End of configuration.
[testng] [2024-03-14 16:00:06,636] [pool-1-thread-10] Initializing /data/stefan/001_q18.txt:
[testng] 16:00:06,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 16:00:06,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:06,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-14_16-00-06.log]
[testng] 16:00:06,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78acb6bc - End of configuration.
[testng] [2024-03-14 16:00:07,533] [pool-1-thread-9] Initializing /data/stefan/001_q01.txt:
[testng] 16:00:07,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 16:00:07,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:07,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-14_16-00-07.log]
[testng] 16:00:07,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32d148c - End of configuration.
[testng] [2024-03-14 16:00:08,494] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt:
[testng] 16:00:08,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 16:00:08,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:08,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-14_16-00-08.log]
[testng] 16:00:08,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30825961 - End of configuration.
[testng] [2024-03-14 16:00:09,373] [pool-1-thread-7] Initializing /data/stefan/001_q07.txt:
[testng] 16:00:09,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 16:00:09,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:09,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-14_16-00-09.log]
[testng] 16:00:09,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a25632b - End of configuration.
[testng] [2024-03-14 16:00:10,659] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt:
[testng] 16:00:10,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 16:00:10,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:10,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-14_16-00-10.log]
[testng] 16:00:10,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65292c70 - End of configuration.
[testng] [2024-03-14 16:00:11,238] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt:
[testng] 16:00:11,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 16:00:11,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:11,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-14_16-00-11.log]
[testng] 16:00:11,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19579e85 - End of configuration.
[testng] [2024-03-14 16:00:12,175] [pool-1-thread-4] Initializing /data/stefan/001_q09.txt:
[testng] 16:00:12,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 16:00:12,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:12,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-14_16-00-12.log]
[testng] 16:00:12,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d4b3f3 - End of configuration.
[testng] [2024-03-14 16:00:13,004] [pool-1-thread-3] Initializing /data/stefan/001_q17.txt:
[testng] 16:00:13,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 16:00:13,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:13,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-14_16-00-13.log]
[testng] 16:00:13,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1365fefb - End of configuration.
[testng] [2024-03-14 16:00:13,459] [pool-1-thread-2] Initializing /data/stefan/001_q13.txt:
[testng] 16:00:13,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 16:00:13,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:13,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-14_16-00-13.log]
[testng] 16:00:13,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f93694d - End of configuration.
[testng] [2024-03-14 16:00:23,158] [pool-1-thread-11] Initializing /data/stefan/001_q06.txt:
[testng] [2024-03-14 16:00:23,793] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt:
[testng] [2024-03-14 16:00:24,418] [pool-1-thread-9] Initializing /data/stefan/001_q10.txt:
[testng] [2024-03-14 16:00:25,440] [pool-1-thread-12] Initializing /data/stefan/001_q05.txt:
[testng] [2024-03-14 16:00:25,883] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt:
[testng] [2024-03-14 16:00:26,321] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 55 seconds
Finished: SUCCESS