Started by upstream project "BIOFORMATS-test-repo" build number 12
originally caused by:
Started by upstream project "Trigger" build number 15
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins12058897360651707837.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_1801_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:25:51,356 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:25:51,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 00:25:51,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:51,359 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:51,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:25:51,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:25:51,360 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:25:51,360 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:51,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:51,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:25:51,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:25:51,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:25:51,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:25:51,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:25:51,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:25:51,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:25:51,575 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:25:51,575 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:25:51,575 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:25:51,576 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:25:51,576 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 00:25:51,576 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 00:25:51,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 216 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-26 00:25:51,586] [main] java.version = 11.0.16
[testng] 00:25:51,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:25:51,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:51,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-26_00-25-51.log]
[testng] 00:25:51,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-03-26 00:25:51,638] [main] testng.directory = /data
[testng] [2024-03-26 00:25:51,638] [main] testng.configDirectory = /config
[testng] [2024-03-26 00:25:51,648] [main] testng.multiplier = 1.0
[testng] [2024-03-26 00:25:51,650] [main] testng.in-memory = false
[testng] [2024-03-26 00:25:51,650] [main] testng.allow-missing = false
[testng] [2024-03-26 00:25:51,650] [main] user.language = en
[testng] [2024-03-26 00:25:51,650] [main] user.country = ${user.country}
[testng] [2024-03-26 00:25:51,650] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-26 00:26:40,525] [main] ----------------------------------------
[testng] [2024-03-26 00:26:40,525] [main] Total files: 226
[testng] [2024-03-26 00:26:40,526] [main] Scan time: 48.875 s (216 ms/file)
[testng] [2024-03-26 00:26:40,526] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-26 00:27:27,315] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 00:27:27,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:27:27,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-26_00-27-27.log]
[testng] 00:27:27,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@766942de - End of configuration.
[testng] [2024-03-26 00:27:27,445] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL:
[testng] 00:27:27,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:27:27,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-26_00-27-27.log]
[testng] 00:27:27,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1da4d690 - End of configuration.
[testng] [2024-03-26 00:27:27,458] [pool-1-thread-11] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] 00:27:27,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:27:27,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-26_00-27-27.log]
[testng] 00:27:27,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bc692d4 - End of configuration.
[testng] [2024-03-26 00:27:27,588] [pool-1-thread-10] Initializing /data/iplab/Chromosomes.IPL:
[testng] 00:27:27,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:27:27,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-26_00-27-27.log]
[testng] 00:27:27,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f60ef6e - End of configuration.
[testng] [2024-03-26 00:27:27,609] [pool-1-thread-9] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 00:27:27,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:27:27,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-26_00-27-27.log]
[testng] 00:27:27,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cb4b556 - End of configuration.
[testng] [2024-03-26 00:27:27,637] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 00:27:27,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:27:27,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-26_00-27-27.log]
[testng] 00:27:27,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e480bb4 - End of configuration.
[testng] [2024-03-26 00:27:27,745] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 00:27:27,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:27:27,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-26_00-27-27.log]
[testng] 00:27:27,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@136436c8 - End of configuration.
[testng] [2024-03-26 00:27:27,955] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] 00:27:27,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:27:27,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-26_00-27-27.log]
[testng] 00:27:27,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b99d60f - End of configuration.
[testng] [2024-03-26 00:27:27,981] [pool-1-thread-5] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 00:27:27,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:27:27,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:27,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-26_00-27-27.log]
[testng] 00:27:27,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ed2469 - End of configuration.
[testng] [2024-03-26 00:27:28,006] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 00:27:28,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:27:28,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:28,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-26_00-27-28.log]
[testng] 00:27:28,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@656eb8af - End of configuration.
[testng] [2024-03-26 00:27:28,046] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 00:27:28,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:27:28,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:28,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-26_00-27-28.log]
[testng] 00:27:28,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42142653 - End of configuration.
[testng] [2024-03-26 00:27:28,133] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 00:27:28,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:27:28,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:27:28,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-26_00-27-28.log]
[testng] 00:27:28,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262f9fe8 - End of configuration.
[testng] [2024-03-26 00:27:30,660] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-03-26 00:27:30,749] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-03-26 00:27:30,857] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-03-26 00:27:30,872] [pool-1-thread-9] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-03-26 00:27:30,882] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-03-26 00:27:30,903] [pool-1-thread-5] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-03-26 00:27:30,917] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-03-26 00:27:31,042] [pool-1-thread-10] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2024-03-26 00:27:31,069] [pool-1-thread-2] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2024-03-26 00:27:31,204] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-03-26 00:27:31,339] [pool-1-thread-11] Initializing /data/iplab/Actin.IPL:
[testng] [2024-03-26 00:27:31,789] [pool-1-thread-10] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-03-26 00:27:31,872] [pool-1-thread-9] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-03-26 00:27:31,904] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-03-26 00:27:32,199] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-03-26 00:27:32,469] [pool-1-thread-6] Initializing /data/iplab/Color Image.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 48 seconds
Finished: SUCCESS