Started by upstream project "BIOFORMATS-test-repo" build number 116
originally caused by:
Started by upstream project "Trigger" build number 133
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins5036419477979150972.sh
+ '[' apng = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18140_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:16:51,548 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:16:51,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:16:51,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:16:51,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:16:51,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:16:51,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:16:51,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:16:51,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:16:51,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:16:51,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:16:51,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:16:51,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:16:51,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:16:51,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:16:51,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:16:51,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:16:51,782 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:16:51,782 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:16:51,782 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:16:51,783 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:16:51,783 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:16:51,784 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:16:51,784 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 232 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-10 02:16:51,796] [main] java.version = 17.0.2
[testng] 02:16:51,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:16:51,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:51,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-10_02-16-51.log]
[testng] 02:16:51,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-10 02:16:51,851] [main] testng.directory = /data
[testng] [2024-07-10 02:16:51,851] [main] testng.configDirectory = /config
[testng] [2024-07-10 02:16:51,860] [main] testng.multiplier = 1.0
[testng] [2024-07-10 02:16:51,861] [main] testng.in-memory = false
[testng] [2024-07-10 02:16:51,861] [main] testng.allow-missing = false
[testng] [2024-07-10 02:16:51,861] [main] user.language = en
[testng] [2024-07-10 02:16:51,861] [main] user.country = ${user.country}
[testng] [2024-07-10 02:16:51,861] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-10 02:16:52,232] [main] ----------------------------------------
[testng] [2024-07-10 02:16:52,232] [main] Total files: 21
[testng] [2024-07-10 02:16:52,232] [main] Scan time: 0.37 s (17 ms/file)
[testng] [2024-07-10 02:16:52,232] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-10 02:16:53,143] [pool-1-thread-1] Initializing /data/samples/phug_logo.png:
[testng] 02:16:53,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:16:53,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-10_02-16-53.log]
[testng] 02:16:53,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d2c8838 - End of configuration.
[testng] [2024-07-10 02:16:53,205] [pool-1-thread-12] Initializing /data/samples/joanna_viera01.png:
[testng] 02:16:53,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:16:53,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-10_02-16-53.log]
[testng] 02:16:53,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@706218a3 - End of configuration.
[testng] [2024-07-10 02:16:53,212] [pool-1-thread-11] Initializing /data/samples/Matrix.png:
[testng] 02:16:53,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:16:53,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-10_02-16-53.log]
[testng] 02:16:53,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62396472 - End of configuration.
[testng] [2024-07-10 02:16:53,225] [pool-1-thread-10] Initializing /data/samples/PhugAnimation3.png:
[testng] 02:16:53,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:16:53,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-10_02-16-53.log]
[testng] 02:16:53,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9827241 - End of configuration.
[testng] [2024-07-10 02:16:53,241] [pool-1-thread-9] Initializing /data/samples/william_wong02.png:
[testng] 02:16:53,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:16:53,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-10_02-16-53.log]
[testng] 02:16:53,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36f0e3f6 - End of configuration.
[testng] [2024-07-10 02:16:53,251] [pool-1-thread-8] Initializing /data/samples/monkey_apng.png:
[testng] 02:16:53,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:16:53,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-10_02-16-53.log]
[testng] 02:16:53,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b44ab50 - End of configuration.
[testng] [2024-07-10 02:16:53,262] [pool-1-thread-7] Initializing /data/samples/chompy2.png:
[testng] 02:16:53,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:16:53,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-10_02-16-53.log]
[testng] 02:16:53,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c231000 - End of configuration.
[testng] [2024-07-10 02:16:53,271] [pool-1-thread-6] Initializing /data/samples/william_wong01.png:
[testng] 02:16:53,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:16:53,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-10_02-16-53.log]
[testng] 02:16:53,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e64b297 - End of configuration.
[testng] [2024-07-10 02:16:53,281] [pool-1-thread-5] Initializing /data/samples/daniel_coltri_one.png:
[testng] 02:16:53,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:16:53,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-10_02-16-53.log]
[testng] 02:16:53,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7919de0b - End of configuration.
[testng] [2024-07-10 02:16:53,293] [pool-1-thread-4] Initializing /data/qa-7473/x.png:
[testng] 02:16:53,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:16:53,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-10_02-16-53.log]
[testng] 02:16:53,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b0a0e8 - End of configuration.
[testng] [2024-07-10 02:16:53,303] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_two.png:
[testng] 02:16:53,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:16:53,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-10_02-16-53.log]
[testng] 02:16:53,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1870b4a8 - End of configuration.
[testng] [2024-07-10 02:16:53,311] [pool-1-thread-2] Initializing /data/colin/test.sfstdge.png:
[testng] 02:16:53,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:16:53,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:53,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-10_02-16-53.log]
[testng] 02:16:53,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2934c063 - End of configuration.
[testng] [2024-07-10 02:16:54,614] [pool-1-thread-3] Initializing /data/samples/Sun.png:
[testng] [2024-07-10 02:16:54,620] [pool-1-thread-5] Initializing /data/samples/atom.png:
[testng] [2024-07-10 02:16:54,622] [pool-1-thread-12] Initializing /data/samples/MoonPhases.png:
[testng] [2024-07-10 02:16:54,628] [pool-1-thread-2] Initializing /data/samples/william_wong04.png:
[testng] [2024-07-10 02:16:54,632] [pool-1-thread-4] Initializing /data/samples/orbit.png:
[testng] [2024-07-10 02:16:54,637] [pool-1-thread-7] Initializing /data/qa-7473/n.tif:
[testng] [2024-07-10 02:16:54,664] [pool-1-thread-11] Initializing /data/samples/StarV838.png:
[testng] [2024-07-10 02:16:54,669] [pool-1-thread-1] Initializing /data/samples/spinfox.png:
[testng] [2024-07-10 02:16:54,860] [pool-1-thread-10] Initializing /data/samples/william_wong05.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS